Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01744 ATGTCAACTATCTCGTCTAATCCTGTAATGGAGCCATGCAACAAAGACTCTAAAGAGAGCAATGGTTCCACAACAGATGTTAGTATGAAGAACTCACTGCACGTGACGATTTACGACCCACACGCATTTGATTGTGGCGTTTGTCTTCAACTCTTGACCATTCCCGTTTTCAAGTGTGATAATGGTCATATTGTTTGCTCAACTTGCTGTGATAAACTTGGGAACAAGTGTGACAAGTGCTCAAAACAAATTAGCTTAAAACGTTCTAGATCCTTTGAGGATCGATTGCAATCTATCAAGATGTCATGCCCAAATGAAAAATATGGCTGCAGGGAGACGATTAGTTACAGTGGAAAAAGAAAGCATGGAGAAGAATGCATCTATGTGCCATGTCATTGTCCCCTTTCAGGTTGTAATTTGGTTGCTTCATTAGAAGTGTTGTACAACCATTTCAACTGCGAACACTGTGATTCGCTAATTGAATTTTCTTATGGCCACCCCTTTGTTGTCTCCTTGAAGTCTAATGATGAAACCGTGGTTCTCCAAGAGGAAAATGATGGCAGACTATACACTCTCAATAATAGTACTATAACGAGTATAGGAAATGCAGTCAATATTAGCTGCATTGATCTTAACTCTTCTTCTGATGCTGGATATAGTTATGATATATCGGCTAAGTCTAAGTTTGGCATGCTGAAGTTACATTCTTTTCCTAAGAATTTCCAACAGGCTACTTTAGCAACTCAATCATCAGCGTTCCTTCTGATTCCATTGGGTTATTTTAGTTCTTCTGAACCTCTCAAGCTAGAAATTTGCATAACCCCCAAGATGAACATATCCATTGAGACCCTGTCTGGAAAGGTGATCACCCTGATGGTTGAGAGTTCAGATACTATAGCCAATGTGAAGGAGAGGATTCTTGAAAAGGAAGGCTTCCCAGTGCATAAGCAACATCTGCACTTTGACAGTCAGCAACTAGATGACAGCCAGTCCCTTGCAAGTTACAACATCAAAGAAATGTCAACCCTTCACCTCACTCTCTGCCTCCTCTAG 1053 0.4055 MSTISSNPVMEPCNKDSKESNGSTTDVSMKNSLHVTIYDPHAFDCGVCLQLLTIPVFKCDNGHIVCSTCCDKLGNKCDKCSKQISLKRSRSFEDRLQSIKMSCPNEKYGCRETISYSGKRKHGEECIYVPCHCPLSGCNLVASLEVLYNHFNCEHCDSLIEFSYGHPFVVSLKSNDETVVLQEENDGRLYTLNNSTITSIGNAVNISCIDLNSSSDAGYSYDISAKSKFGMLKLHSFPKNFQQATLATQSSAFLLIPLGYFSSSEPLKLEICITPKMNISIETLSGKVITLMVESSDTIANVKERILEKEGFPVHKQHLHFDSQQLDDSQSLASYNIKEMSTLHLTLCLL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01744 350 ProSiteProfiles Ubiquitin domain profile. 277 347 IPR000626 GO:0005515
Vifa1g01744 350 ProSiteProfiles Zinc finger SIAH-type profile. 98 156 IPR013010 GO:0008270
Vifa1g01744 350 SMART ubq_7 277 348 IPR000626 GO:0005515
Vifa1g01744 350 Pfam Ubiquitin family 279 347 IPR000626 GO:0005515
Vifa1g01744 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 151 IPR013083 -
Vifa1g01744 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 274 IPR044286 -
Vifa1g01744 350 SUPERFAMILY TRAF domain-like 98 274 - -
Vifa1g01744 350 Gene3D - 271 350 - -
Vifa1g01744 350 Pfam Seven in absentia protein family 96 168 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01744 350 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g01744 350 CDD RING-HC_SIAHs 43 81 - -
Vifa1g01744 350 PRINTS Ubiquitin signature 308 328 IPR019956 -
Vifa1g01744 350 PRINTS Ubiquitin signature 287 307 IPR019956 -
Vifa1g01744 350 PRINTS Ubiquitin signature 329 350 IPR019956 -
Vifa1g01744 350 SUPERFAMILY Ubiquitin-like 261 347 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01744 Vifa-Chr1 284152283 284154252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01744 277 349 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 57.534 2.87e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01744 K04506 - mtr:11432566 395.586