Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01742 ATGGAACCGTGCACCGGAGAGACCGCTGAATTCGCAAAAGAAGATAATAAGAGTAGTCCCATTTCAGTGATGATTTCCGACCCACGAGTCTTTGATTGCTGCATTTGTTTTCAACCTTTGAGTACTCCCGTATTTCTGTGTGGTAATGGTCATATTGTTTGCTCTACATGCTGTGATAAACTTGGGAAAGTGTGTGACAAGTGCTCAAATCGCATTGGTTTAAAAAGTTTTAGAGCCTTTGACAATCTATTGCAATCTATCAAGATGTCTTGCTCAAATGAAAAACATGGATGCAAGAAGACAATAAGTTTCAGTGATAAGAGGAAACATGAAGATGAATGCATCTATGAGCCATGTTACTGTCCCTTTTCTGGTTGTGAATTTGTTGCCTCATCGGAATCGTTGTCCAATCATTTCAGCCATAAACATGGGGATTCTCTAATCAAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGAAATCTAATGATGAAGTCACTGTTCTTCAAGAAAAAACTAATGGGAAACTATTTATTCTAAACAATAGTACTACAGTTATGGGAAATGCAATCGATATCTGTTTCATCGGTCCTAAATTTTCAATGGCCAAGTATGGTTATACTATATCAGCAAGGTTCGAAAAATGCAACCTGAAGTTTACGTCCTCCTCAAAGAACGTCCAGCGGGTTGATTTAACAACTCTTTCACCTCCGTTTCTTCTAATTCCATTTGGTTATTTTGGCTCTTCTAAACTTCTCAATTTAAAAGTTTTCGTAATCCCCGAGATACAAATCTTTATAAATAGACCGCTTGAACTGATGATCTCCTTGAAGGTGGAGAGTTCAGACACAATAGGCAATGTGAAAGTGAAGATTTTGAACAAGGAAGGGATCCCCGTGGATCAACAAAACCTGATCTTTGCCAAAAAGCAACTACATGACAACTGCACCATCGCGGATTACAACATCCAAGAGAATTCAATCCTTCTACTCATTTCCAAACCATCATTTTAA 1014 0.3807 MEPCTGETAEFAKEDNKSSPISVMISDPRVFDCCICFQPLSTPVFLCGNGHIVCSTCCDKLGKVCDKCSNRIGLKSFRAFDNLLQSIKMSCSNEKHGCKKTISFSDKRKHEDECIYEPCYCPFSGCEFVASSESLSNHFSHKHGDSLIKFSYGHSFIVSLKSNDEVTVLQEKTNGKLFILNNSTTVMGNAIDICFIGPKFSMAKYGYTISARFEKCNLKFTSSSKNVQRVDLTTLSPPFLLIPFGYFGSSKLLNLKVFVIPEIQIFINRPLELMISLKVESSDTIGNVKVKILNKEGIPVDQQNLIFAKKQLHDNCTIADYNIQENSILLLISKPSF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01742 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 258 IPR044286 -
Vifa1g01742 337 PRINTS Ubiquitin signature 273 293 IPR019956 -
Vifa1g01742 337 PRINTS Ubiquitin signature 294 314 IPR019956 -
Vifa1g01742 337 PRINTS Ubiquitin signature 315 336 IPR019956 -
Vifa1g01742 337 SUPERFAMILY TRAF domain-like 86 222 - -
Vifa1g01742 337 ProSiteProfiles Zinc finger SIAH-type profile. 86 144 IPR013010 GO:0008270
Vifa1g01742 337 Pfam Ubiquitin family 275 333 IPR000626 GO:0005515
Vifa1g01742 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 139 IPR013083 -
Vifa1g01742 337 ProSiteProfiles Ubiquitin domain profile. 263 334 IPR000626 GO:0005515
Vifa1g01742 337 Gene3D - 262 332 - -
Vifa1g01742 337 Pfam Seven in absentia protein family 81 229 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01742 337 SMART ubq_7 263 334 IPR000626 GO:0005515
Vifa1g01742 337 SUPERFAMILY Ubiquitin-like 247 334 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01742 Vifa-Chr1 283954778 283956406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01742 263 332 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 61.429 1.85e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01742 K04506 - mtr:11432566 407.142