Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01740 ATGGAGCCATGTTCCAAAGTCCTTGTTGATTCTGCAAAAGATATAAATCAGGATAGCTCCCTTTCTCTGGTTTTTTCCGACCCTTATGCTTTTGATTGCTGCGTTTGTTTTGAAACCTTGACTGTTCCAGTATATCAGTGTGATAACGGCCATATTGTTTGCTCTTCATGCTGTTGTAAGCTTTTGAATGAGTGTCACATCTGCCCAGATCGTATTAGCTTCTACCCTTGTATAGCCATTGACAATCTGTTGCGGTCTCTCGAAATATCATGCAAGAATGAAAAACATGGCTGTAGAGAGAAAATAAGTCACGGGGGAAACAAAGAGCATGAGGAAGAATGCATCTACGCGCCATGTTACTGTCCACATCCGGGTTGTGACTTTGTTGCATCATCTGAAGTGTTGTCTAACCATTTCAGCCATGAACATGAAGATGCTCTAATCAAATTTTCCTATGGTCACTCCTTCACGGTCTCCTTGAAGTCTAGTGATGAAACCATTGTTCTACAAGAGGAAAATGATGGCAAGCTGTTTATTCTCAATAATAGTTCTATGAGTATGGGAAATGCAGTCAATATTAACTGCATTGATCCTGACTCTTCTGATGCTGTGTATTGTTATGATATAATGGCTATGTCTAAGATATGCAGTGTGCTGAAATTACATTCTTTTACTAAGAGGGTTCAGAAGATTACTTTACCAACTATTTCATCAGAGTTCCTCTTGATTCCATTTTGGTTTTTTGTTTCTTCCGAGCAGGTTGATATAGAAATTTGCATAACTCCAATGATACAAATATTCATAATAACCCTTGATGGAATAAAGCTTCCTCTGATGGTAAAGAGTTCAGATACGATAGCCAACGTGAAGGCGAAGATTTTGGACATGAATGGAATACCAGTGATACATCTGATCATTAACGGTCAGATACTAGATAACAACCTCACAATTGCTGATTACAACGTTCAAGAGAAGTCAACCGTCTACTGTCTCCTTCACACCCGTTCTGGACCACCCTCACCATTAGTAGAATCACCGTAG 1041 0.3939 MEPCSKVLVDSAKDINQDSSLSLVFSDPYAFDCCVCFETLTVPVYQCDNGHIVCSSCCCKLLNECHICPDRISFYPCIAIDNLLRSLEISCKNEKHGCREKISHGGNKEHEEECIYAPCYCPHPGCDFVASSEVLSNHFSHEHEDALIKFSYGHSFTVSLKSSDETIVLQEENDGKLFILNNSSMSMGNAVNINCIDPDSSDAVYCYDIMAMSKICSVLKLHSFTKRVQKITLPTISSEFLLIPFWFFVSSEQVDIEICITPMIQIFIITLDGIKLPLMVKSSDTIANVKAKILDMNGIPVIHLIINGQILDNNLTIADYNVQEKSTVYCLLHTRSGPPSPLVESP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01740 346 Pfam Seven in absentia protein family 77 158 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01740 346 CDD RING-HC_SIAHs 31 68 - -
Vifa1g01740 346 Gene3D - 260 341 - -
Vifa1g01740 346 ProSiteProfiles Zinc finger SIAH-type profile. 86 144 IPR013010 GO:0008270
Vifa1g01740 346 Pfam Ubiquitin family 266 335 IPR000626 GO:0005515
Vifa1g01740 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 139 IPR013083 -
Vifa1g01740 346 ProSiteProfiles Ubiquitin domain profile. 264 337 IPR000626 GO:0005515
Vifa1g01740 346 PRINTS Ubiquitin signature 314 335 IPR019956 -
Vifa1g01740 346 PRINTS Ubiquitin signature 274 294 IPR019956 -
Vifa1g01740 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 262 IPR044286 -
Vifa1g01740 346 SUPERFAMILY TRAF domain-like 86 261 - -
Vifa1g01740 346 SUPERFAMILY Ubiquitin-like 241 340 IPR029071 -
Vifa1g01740 346 SMART ubq_7 264 333 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01740 Vifa-Chr1 283793521 283794805 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01740 264 337 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 50.000 2.83e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01740 K04506 - mtr:11432566 391.734