Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01738 ATGATCAAAGGTAATGAAAGGCCAAAGAGGGGAGGACTCCGGAAAACCAAAAGCCAACCCAACACTTCAAGCTGCTCGGTGATCAAACAAGCAATGGATTCATGCTCGAAAGACTCTGTTAATTCCGAAGAAGATGTTGCTAGTAAAGAGGATAACTCCGTTTCTGTTATTATTTCCAACCCTAAAGTTCTCGATTGTTACAACTGTTTTCAACCCTTAACTGTTCCAGTCTTTCAGTGTGATAATGGTCATACTTTTTGCTCTACCTGTTGTCCTCAACTTGAGAACAAGTGTGTCCAGTGTTCATCGCGCATTAGCTCAAAAGGTTGTAAAGCCATAGAGAATATTCTGCAATCTATTGAAATGCCATGTTCAAATGAAGAATATGGCTGTAGGGAGACAATAACGTATATTGGAAAGAAAAAGCATGTGGAAAGATGCAAATATGCACCGTGTTACTGTCCCCTTTTAGGTTGTGACTTTGTTGCTCAATCCAGAGTTTTGTCCAACCATTTCAGCCACAAACACGAGGGCTCTCTGATCAAATTTTCTTATGGTCACTCCTTCATTGTATCCTTGAAGTTCAATGAAGAAACCATTGTTCTTCAAGAAGAAAATTCTGGCAAATTATTTATTCTCCATAATAGTGCTCTGCTTTTGGGAAATTCAGTCAATATTAGCTGCATTGATTCTAACTTTTTTAAGCCCTATTATGGTTATGATATATTGGCTAGGTCCAAGAATTGCAGTCTAAAATTGCATTCTTCTGCGAAGAATGTCCAGAAGGTTAGTTTAGCAAGTAATTCATCAGAGTTCCTCGTGATTCCATCTAGTTATTTTGGTTCTTCTAAATTTGTCAAGCTAGAAATTTGCATAACCCGCAAGATGCAAATCTTTCTAACTCTGACTGCAAAAACGATCACTCTGATTGTTGAGAGTTCCGACACCATAGCCAATGTGAAGGAGGTGATTCTTGATATGGATGGGATCCCAGTGAGTCAGCAACGCCTGATTTTTCAAAGCAGGCAACTAGATGACCACAGCACCATAGCAGATTGCAACATCCAACATGGATCAACCCTCCGCCTCTTGCTCCGCCTCCTTGGAGGTTCCGTATCATAA 1122 0.4002 MIKGNERPKRGGLRKTKSQPNTSSCSVIKQAMDSCSKDSVNSEEDVASKEDNSVSVIISNPKVLDCYNCFQPLTVPVFQCDNGHTFCSTCCPQLENKCVQCSSRISSKGCKAIENILQSIEMPCSNEEYGCRETITYIGKKKHVERCKYAPCYCPLLGCDFVAQSRVLSNHFSHKHEGSLIKFSYGHSFIVSLKFNEETIVLQEENSGKLFILHNSALLLGNSVNISCIDSNFFKPYYGYDILARSKNCSLKLHSSAKNVQKVSLASNSSEFLVIPSSYFGSSKFVKLEICITRKMQIFLTLTAKTITLIVESSDTIANVKEVILDMDGIPVSQQRLIFQSRQLDDHSTIADCNIQHGSTLRLLLRLLGGSVS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01738 373 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g01738 373 Gene3D - 291 373 - -
Vifa1g01738 373 Pfam Ubiquitin family 299 367 IPR000626 GO:0005515
Vifa1g01738 373 CDD RING-HC_SIAHs 64 102 - -
Vifa1g01738 373 Pfam Seven in absentia protein family 112 215 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01738 373 SUPERFAMILY TRAF domain-like 120 293 - -
Vifa1g01738 373 MobiDBLite consensus disorder prediction 15 37 - -
Vifa1g01738 373 SUPERFAMILY Ubiquitin-like 279 370 IPR029071 -
Vifa1g01738 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 294 IPR044286 -
Vifa1g01738 373 PRINTS Ubiquitin signature 326 346 IPR019956 -
Vifa1g01738 373 PRINTS Ubiquitin signature 305 325 IPR019956 -
Vifa1g01738 373 PRINTS Ubiquitin signature 347 368 IPR019956 -
Vifa1g01738 373 SMART ubq_7 296 366 IPR000626 GO:0005515
Vifa1g01738 373 ProSiteProfiles Zinc finger SIAH-type profile. 119 177 IPR013010 GO:0008270
Vifa1g01738 373 ProSiteProfiles Ubiquitin domain profile. 296 370 IPR000626 GO:0005515
Vifa1g01738 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 172 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01738 Vifa-Chr1 283687110 283688846 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01738 296 371 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 66.234 4.68e-24 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01738 K04506 - mtr:11432566 406.371