Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01735 ATGGAACCATGCACAAAAAACTGTGTTAATTCCGCGGAAGAGGATAAATCCGTTTCTGTTGTTATTTCCAACTCTAAAGTTCTCGATTGCTGCAACTGTCTTCAACCCTTAACTATTCCAGTCTTTCAGTGTGATAATGGTCATACTGTTTGCTCTACCTGTTGTCCTCAACTTGAGAACAAGTGTGTCCAGTGTTCATCGCGCATTAGCTCTAAACGTTGTAAAGCCATAGAAAATATTCTGCAATCTATGGAAATGCCATGTCCAAATGAAGAATATGGTTGTAGCGAGAAAATAAGTTATAGTGGAAAGAAAAAGCATGTGGAAAGATGCAACTATGCACCGTGTTACTGTCCCCTTTTAGGTTGTGACTTTGTTGCTCAATCCAGAGTTTTGTCCAACCATTTCAGCCATAAACACGAGGGCTCTCTGATCAAATTTTCTTATGGTCACTCCTTCATTGTATCCTTGAAGTTCAATGAAGAAACCATTGTTCTTCAAGAAGAAAATTCTGGCAAATTATTTATTCTCAATAATAGTGCTATGCTTTTGGGAAATTCAGTCAATATTAGCTGCATTGATCCTAACTTTTTTAAGGCCTATTATGGTTATGATATATTGGCTAGGTCTAAGAATTGCAGTCTAAAATTGCATTCTTCCGCGAAGAATGTCCAGAAGGTTACTTTAGCAAGTAATTCATCAGAGTTCCTCGTGATTCCATCTAGTTATTTTGGTTCTTCTAAATTTGTCAAGTTAGAAATTTGCATAACCCGCAAGATGCAAATCTTTCTAAACAATCTGGATGGAAAGACGATCCCTCTGTTTGTTGAGAGTTCCGACACCATAGCCAATGTGAAGGAGGTGATTCTTGATATGGATGGGATCCCAGTCCACGAGCAACGCCTGCTTTTTCAAAGCAGGCAACTAGATGACCACAGCACCATAGCAGATTGCAACATCCAACGTGAATCAACCCTCCACCTCTTGCTCCGCCTCCGTGGAGTTTCTGTATCATAA 1017 0.3953 MEPCTKNCVNSAEEDKSVSVVISNSKVLDCCNCLQPLTIPVFQCDNGHTVCSTCCPQLENKCVQCSSRISSKRCKAIENILQSMEMPCPNEEYGCSEKISYSGKKKHVERCNYAPCYCPLLGCDFVAQSRVLSNHFSHKHEGSLIKFSYGHSFIVSLKFNEETIVLQEENSGKLFILNNSAMLLGNSVNISCIDPNFFKAYYGYDILARSKNCSLKLHSSAKNVQKVTLASNSSEFLVIPSSYFGSSKFVKLEICITRKMQIFLNNLDGKTIPLFVESSDTIANVKEVILDMDGIPVHEQRLLFQSRQLDDHSTIADCNIQRESTLHLLLRLRGVSVS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01735 338 Gene3D - 254 338 - -
Vifa1g01735 338 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Vifa1g01735 338 SUPERFAMILY Ubiquitin-like 243 334 IPR029071 -
Vifa1g01735 338 Pfam Ubiquitin family 262 333 IPR000626 GO:0005515
Vifa1g01735 338 CDD RING-HC_SIAHs 28 66 - -
Vifa1g01735 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 258 IPR044286 -
Vifa1g01735 338 SMART ubq_7 260 331 IPR000626 GO:0005515
Vifa1g01735 338 PRINTS Ubiquitin signature 270 290 IPR019956 -
Vifa1g01735 338 PRINTS Ubiquitin signature 291 311 IPR019956 -
Vifa1g01735 338 PRINTS Ubiquitin signature 312 333 IPR019956 -
Vifa1g01735 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 136 IPR013083 -
Vifa1g01735 338 ProSiteProfiles Zinc finger SIAH-type profile. 83 141 IPR013010 GO:0008270
Vifa1g01735 338 FunFam Polyubiquitin 5 260 335 - -
Vifa1g01735 338 Pfam Seven in absentia protein family 73 166 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01735 338 SUPERFAMILY TRAF domain-like 86 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01735 Vifa-Chr1 283352984 283354442 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01735 260 334 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 65.333 2.60e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01735 K04506 - mtr:11432566 419.853