Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01727 ATGTCACTTACTTCCCTCTTCACAACAACACTAACCTTCTTCCTACTCATCACAAAAGCAACCTCTCACTACTCCTCCTCATCTTCTCAACAAACTTCCCCATCTTTCACCGAATGGAGATCCGCACGCGCTACCTACTACGCCGCCGTCGATCAACGTGACACAGTCGGCGGCGCGTGCGGCTACGGCGACCTTACAAAAGCCGGTTACGGTATGGCTACTGTAGGTCTTAGCGAAGCTTTGTTCGAACGAGGTCAGATCTGCGGCGCGTGCTTTGAATTACGGTGTGTTGAGGATTTGCGGTGGTGTATTCCTGGAACTTCGATTATCGTTACTGCAACTAACTTCTGTGCGCCGAATTATGGATTCACGACGGATGGAGGTGGACATTGTAATCCGCCTAATAAGCATTTTGTACTTCCTATTGATGCTTTTGAGAAGATCGCTATATGGAAAGCTGGTAACATGCCTCTTCAGTATCGGAGGATAAAGTGCAGAAGAGAAGGTGGAGTTCGATTTACAGTCACTGGTTCTGGTATCTTCATTTCAGTACTGATCAGCAATGTTGCTGGCCATGGAGACATAGTTGAGGTAAAGGTTAAGGGCTCAAGAACAGGATGGCTTTCAATGGGTCGGAACTGGGGCCAAAACTGGCATATAAACGCATTACTACAAAATCAACCCCTTTCATTTGAGGTTACGAGTAGTGATGGGAAAACAGTTACAGCTTACAATGTTGCTCCCAAGGATTGGAGTTTTGGACAAACCTTTGAAGGAAAGCAATTTGATTATTAA 795 0.4591 MSLTSLFTTTLTFFLLITKATSHYSSSSSQQTSPSFTEWRSARATYYAAVDQRDTVGGACGYGDLTKAGYGMATVGLSEALFERGQICGACFELRCVEDLRWCIPGTSIIVTATNFCAPNYGFTTDGGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYRRIKCRREGGVRFTVTGSGIFISVLISNVAGHGDIVEVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTAYNVAPKDWSFGQTFEGKQFDY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01727 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Vifa1g01727 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Vifa1g01727 264 Gene3D - 22 166 IPR036908 -
Vifa1g01727 264 SMART dpbb_1 74 160 IPR007112 -
Vifa1g01727 264 PANTHER EXPANSIN-A15 11 262 IPR002963 GO:0009664
Vifa1g01727 264 Gene3D - 170 262 IPR036749 -
Vifa1g01727 264 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Vifa1g01727 264 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Vifa1g01727 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Vifa1g01727 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Vifa1g01727 264 Pfam Lytic transglycolase 75 160 IPR009009 -
Vifa1g01727 264 CDD DPBB_EXPA_N 38 165 - -
Vifa1g01727 264 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01727 Vifa-Chr1 282172913 282175161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01727 38 263 Expansin Gene Family AT3G03220 83.628 4.28e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01727 - - gmx:100809568 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01727 1 282172913 282175161 Vifa1g01727 1 282172913 282175161 ECH
Vifa2g01484 2 400987046 400997864 Vifa1g01727 1 282172913 282175161 PCT