Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01726 ATGGATTCTGTTATACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCTTTGAAGGTAAGGAAACCTTATACTATCACAAAGCAGAGAGAGAAATGGACAGATGAAGAACATAAGAAGTTTCTTGAAGCTTTAAAGTTGTATGGTCGAGCATGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTAATGGGAACGATACAACATTGGTGGAGTCAATTGAAATTCCACCTCCACGACCGAAGCGGAAGCCGATTCATCCTTACCCTCGTAAACTAGTAGAGATCCCGAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCCCCCGCGTCATTAGATTTTGGTCAAGAAAGTAACTCGCCCAAGTCAGTACTATCTGCAGTTGCTTCAGAAACACTCGGTTTCTCGGATTCGGATTACCCAACTAGAAGTTTGTCCCCTGTCTCATCCGTTAGTGCTGTCCAAACCTGTAGCTTTCCACTTCTTGAGACCAAATCTTCATCATCTGAGGAAGATATGTCTCTACAAATAGATGAACTGAATGCTGATTCAGCACATGATGAACAACTTATAATGAAACCAGAGCTTTTCTCTAAAGAATGTGTCGTTACCAACGACGAAACAACAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAGCAACTCTACTTGTAAAAGATACCTGCCATCCTTCTACATCAACGAGTGCATCCATACCGATACCTACTGAGCATCATACGCAGCAACTGAAGCGTGGAAATTCAGATATTGGTGTTGCAACTGTTGTTCCTTGGTGGACTCTTTCTCAGAGTTCAGCCTCCAACAAGGAAAAAGAGGGGAAATATCGACATTCAAATCATGGAGAATGTGAGGATAAAGAAATTCAAAAGGAAGGATCTTCTTCCGCTGGTTCTAATAATACTAGTTTGATCAATGATGGAGAAAGCAATGAAAGATCGGAAGATCAAGCCAAAAGTGATCATGTGCAGTACCTTGTTGGCCAAAGTGAAACAGTGAGACTTAGAACATTTGGAAAAGGGTTTGTGCCATATAAAAGATGCATGGCAGAAAGAGAAAGCCAGTGTTCAACAGTAAGAGATGAGAGGAGGGAACATCAACGTATAAGGCTTTCTTTATAG 1224 0.4093 MDSVIHVHKLLDQFSCGNDHALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTLVESIEIPPPRPKRKPIHPYPRKLVEIPKNEISNLEQPLRSNSPASLDFGQESNSPKSVLSAVASETLGFSDSDYPTRSLSPVSSVSAVQTCSFPLLETKSSSSEEDMSLQIDELNADSAHDEQLIMKPELFSKECVVTNDETTEESPCRTLKLFGATLLVKDTCHPSTSTSASIPIPTEHHTQQLKRGNSDIGVATVVPWWTLSQSSASNKEKEGKYRHSNHGECEDKEIQKEGSSSAGSNNTSLINDGESNERSEDQAKSDHVQYLVGQSETVRLRTFGKGFVPYKRCMAERESQCSTVRDERREHQRIRLSL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01726 407 ProSiteProfiles SANT domain profile. 32 83 IPR017884 -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 304 326 - -
Vifa1g01726 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Vifa1g01726 407 SMART sant 33 81 IPR001005 -
Vifa1g01726 407 Pfam Myb-like DNA-binding domain 34 77 IPR001005 -
Vifa1g01726 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Vifa1g01726 407 Gene3D - 36 83 - -
Vifa1g01726 407 CDD SANT 36 79 IPR001005 -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 127 147 - -
Vifa1g01726 407 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 259 282 - -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 327 342 - -
Vifa1g01726 407 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 301 356 - -
Vifa1g01726 407 PANTHER SWI/SNF COMPLEX-RELATED 19 305 - -
Vifa1g01726 407 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Vifa1g01726 407 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01726 Vifa-Chr1 282141259 282143127 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g01726 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01726 - - gmx:778060 450.284