Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01724 ATGGCTAAGAACAATGGAAAATCCAACAAGGATTTTGGTGATGAAATTCAGAATTACAACAAGTTTACACAAACGGGTGAAAGCCAAGTTAATTGGGAGAACCAAAAAGGAAAAAGTGTTGAATTAAGCACTTCTCAAAAGCATCATTGGAAGCCCGTTTTCGACGAAGCTTCTTCCATTTCACATAATAGACCTTTCAAGAAAAGCAAAAGCCCTGAACGTGAAAATCAAAATCAAAATCAGTTTTCACCTTTCTCTCTTCCTTCTCCAGCTTCTTCTTCTTCAAGACATGTTTTTCCCTTTGCTTTTGATAATAACAATTCTCAACAATTCAATTTACCTTTTCACCCTCCACCCCAACCTATTCAAACAACACAAAACCAACAAATGATATCTTTTGGGTCACAAACACAAACACAACAACAGAACAATATTGTTTCATATCCTCCACCGATTTTGTCGCAACAACATCATCAACAGCTTCTTCAGTATTGGAGTGATGCATTGAATCTTAGTCCAAGAGGAAGAATGTTGATGATGATGAACAACAATAACAATAGGTACTTGGGAGGGCAATATGGTAATAATAATAATGGAGCAATGTTTAGGCCCCAAGTTCAACCTATAAGCACAACAAAACTCTATAGAGGAGTTAGACAACGCCATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCGCGAAATCGTACTCGTCTTTGGTTAGGCACATTTGATACTGCAGAAGATGCCGCTTTAGCCTATGATCGTGAAGCCTTCAAGTTAAGAGGAGAGAATGCGCGGCTCAATTTTCCTGAGCTTTTTCTCAACAAAGATAAAGATAAAGACAAAGAAGAAGAAAAAGAAAATGAAGAAGGAGAAGCGCATTCATCGCCACCTCCAACGACATCAACAACAACAGATTCATCGGTTTCTTGTCCTTCAAGTAACACCGTTACAAAGCAGCCTGAAACTCCTTTGATGCAGACACTTCCAATGGAGGAGTCTAATGAGAATGACTCCGGAATTGGATCGAGTGACGCGAGTCACGCGACGGTGAGTGAAGGCGTAGAAGGAGTTTCAGTTTCACAGTCACAAGAACTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATCCCAGCTGGTTGGGGACCAGGTAGTCCTGTTTGGGATGATTTGGATACAAACAACAATCTTAATCTTTTTTCGCAGTCACAAATTCCATTTTCCAATCTCAACCAACAATCAGAATTCAGTGATTTTGATCCTCAGATGAGGTCAAGTTCTTTCATTAGCCCTTTCTACTGGAACAATGATCAGAATTAA 1326 0.3959 MAKNNGKSNKDFGDEIQNYNKFTQTGESQVNWENQKGKSVELSTSQKHHWKPVFDEASSISHNRPFKKSKSPERENQNQNQFSPFSLPSPASSSSRHVFPFAFDNNNSQQFNLPFHPPPQPIQTTQNQQMISFGSQTQTQQQNNIVSYPPPILSQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNNRYLGGQYGNNNNGAMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDKEEEKENEEGEAHSSPPPTTSTTTDSSVSCPSSNTVTKQPETPLMQTLPMEESNENDSGIGSSDASHATVSEGVEGVSVSQSQELVWSEMSAWFNAIPAGWGPGSPVWDDLDTNNNLNLFSQSQIPFSNLNQQSEFSDFDPQMRSSSFISPFYWNNDQN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01724 441 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Vifa1g01724 441 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g01724 441 MobiDBLite consensus disorder prediction 25 41 - -
Vifa1g01724 441 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Vifa1g01724 441 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Vifa1g01724 441 MobiDBLite consensus disorder prediction 25 102 - -
Vifa1g01724 441 MobiDBLite consensus disorder prediction 75 102 - -
Vifa1g01724 441 Pfam AP2 domain 215 263 IPR001471 GO:0003700|GO:0006355
Vifa1g01724 441 MobiDBLite consensus disorder prediction 277 294 - -
Vifa1g01724 441 MobiDBLite consensus disorder prediction 277 358 - -
Vifa1g01724 441 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 31 393 - -
Vifa1g01724 441 FunFam Ethylene-responsive transcription factor 2 213 272 - -
Vifa1g01724 441 CDD AP2 213 273 IPR001471 GO:0003700|GO:0006355
Vifa1g01724 441 Gene3D AP2/ERF domain 214 272 IPR036955 GO:0003700|GO:0006355
Vifa1g01724 441 MobiDBLite consensus disorder prediction 295 358 - -
Vifa1g01724 441 MobiDBLite consensus disorder prediction 42 74 - -
Vifa1g01724 441 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vifa1g01724 441 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01724 Vifa-Chr1 281694061 281695386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01724 112 392 AP2-EREBP Transcription Factor Family AT2G20880 44.097 3.81e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g01724 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01724 - - psat:127086869 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01724 1 281694061 281695386 Vifa1g01724 1 281694061 281695386 ECH