Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01717 ATGAACACGGGCAAATCTGAAGCAGAACAGTTACTGGAAATTGGAGAAGAGCTTTTACAAAAACGAGATCTAAAAGGTTCAAGAGAAATAGCGGTTCTAGCTCAAGAAACCGACCCTCTTCTAGAAGGTTCCGACCAGATCATAGCAATAGTCGATGTTCTCGAAGCAGCTGAAAAGCCTCTAAATCTCAACAACAACAACAGCAACAACCTCGACTGGTATGCTATTCTCCAAATCGATCGAAATTACTCGCCAGATCTGAATCTCATAAAGAAACAGTATCGTACTCTTGCTCTTCTTCTTCACCCTGACAAGAACCGTTTTTCATTTGCTAAACTCGCCTTCAGGCTTGTGTCTGATGCTTGGGCCGTTTTGTCTGACTCGGCTCGAAAGGCTGAGTATGATAAGGGTTTTGAATTTGGGGATAAGAGTTTGGAAAATGGAAGGGTTAGTTTTTGGACTGTTTGTCCTTATTGTTACCATTTGTATGAGTATTCTAGGGTTTATGAGAGTTGTTGCTTGATGTGTCAGAATTGTAACAAATCTTTTCATGGTGTTTCAATTTCGGCTCTTCCGCCGATTGTGCCCGGACAAGAAGCTTATTATGTTTCTTGGGGAATGTTTCCGATGGGTTTTGTTTTTGAGAGTTTAGAAAATGGCGGAGATGGTAGTGTTTCTGCTACGCCATAG 690 0.4159 MNTGKSEAEQLLEIGEELLQKRDLKGSREIAVLAQETDPLLEGSDQIIAIVDVLEAAEKPLNLNNNNSNNLDWYAILQIDRNYSPDLNLIKKQYRTLALLLHPDKNRFSFAKLAFRLVSDAWAVLSDSARKAEYDKGFEFGDKSLENGRVSFWTVCPYCYHLYEYSRVYESCCLMCQNCNKSFHGVSISALPPIVPGQEAYYVSWGMFPMGFVFESLENGGDGSVSATP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01717 229 CDD DnaJ 72 127 IPR001623 -
Vifa1g01717 229 Gene3D DnaJ domain 58 152 IPR036869 -
Vifa1g01717 229 SUPERFAMILY Chaperone J-domain 68 139 IPR036869 -
Vifa1g01717 229 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Vifa1g01717 229 ProSiteProfiles dnaJ domain profile. 72 138 IPR001623 -
Vifa1g01717 229 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 219 - -
Vifa1g01717 229 Pfam DnaJ domain 72 135 IPR001623 -
Vifa1g01717 229 SMART dnaj_3 71 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01717 Vifa-Chr1 280794825 280795514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01717 2 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 50.813 7.10e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01717 - - psat:127118345 388.267