Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01716 ATGCCTCAACTTAAGCTACTTGTTATTCTTCTTCACATTGTAACCTGTGTTTCAACTACTGAATTTGTCTATAATACAAACTTCAACTCCACAAACATCGACTTATATGGAAATGCAACCATTAACAAATCCATTCTCACTCTCACTAATGGCACTTCAGCTTCCTTCGCAATAGCTCGTGCTTTTTACCCTTTTATAGTACCTACCAAACAACCAAACTCTTCCGCTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCTCTTGCTCCTATCGAAAACTTTATCACAGGACATGGCTTTGCTTTCATATTCACGCCTTCGAGAAGTCTAAATGGAACAACGTCCACCGAGTATTTCGGTCTCCTCAACTACACTAATGAAGATAATCATAATGACCATATATTTGGAGTAGAATTCGATGTAGTTAAGAACGAAGAATTCGAGGATATAAATGATAATCATGTTGGTATCGACATAGACTCTCTTAGATCCTTAACTTCGCATACCGCTGGCTATTGGGATGGGAAAGATGGCAAGAAATTTAAAGTGCTGAACATAAAAAGTGGAGAAAACTATCAAGTATGGATTGAGTTTATCCAATATCAGCTAAATGTTACGATGGCTCCAGCAGGAAGAAAAAGGCCAAATGTGCCTCTTATCAGCACGAATCTTAGCCTTTATAAGGTTCTTGGTAGTGAAACTTCTGTTGGATTCAGCGCATCCAATGGGGTGAAAAAAGATAGTGTTAAGATTCTTGCTTGGAGCTTTAGTAATTCGAATTTTTCAATTGGTGATGCTTTAGTGACAGACAACTTGCCTTCATTTGTCCCTTATAAGGGATGGTTTTCTGGAGCAAAAGCTATAGCTGTAGAAGTCGCCAGTGTTTTCTGTTTGTTAACCATCGGTTGCGGTTGCATAGTGTTTTTCATCCTATATAGAGGGAAAAAAGGAGAAGAAGAAATTGAAGAGTGGGAGCTAGAATATTGGCCACATAGAATTAGTTTCCAAGAGATTCATGCAGCTACAGGAGGGTTCCCTGAAGAGAATGTGGTTGCTGTTGGTGGAAACGGAAAGGTGTATAAAGGGATTTTGCAAGGAGTTGAAGTTGCGGTCAAGAGAATTCCTCAAGAAAGAGAAGATGGGATGAGAGAGTTTTTGGCAGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAGGATTTAGAGGTTGGTGCAAAGAAGGAAATGGAAACTTGATTCTAGTTTATGACTTCATGAATAATGGTTGTTTAGACAAATGGATCTTTGAATGTGAAGAAGGAAAGATGCTAACATGGGAAGAAAGGGTTCAAGTTTTGAAAAATGTAGCTGCAGGAATTCTATACCTGCATGAAGGTTGGGAAGTAAAGGTCTTACATAGAGATATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGAGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGACAAGTGGCCAGCACAACAAAAGTACTAGGGACATTAGGATACATTGCTCCGGAAGTGATTCGAACGGGAAGAGCGTCAACTATGTCAGATGTGTTCGGCTTTGGAATATTAATGTTGGAAGTAATTTGTGGGCGAAGACCTATTGAAGAGCATAAGCTAGGGCTAATTGAATGGGTGGAGTCCTTAATGGTGCTTGATCAATTGCACAATGCATGTGATGAAAGGTTGAAGGCCAGAGGAGGATATCCTATTGAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAATAATGAGACAGGTTGTGAAAATCTTGGAGGGAGAAAAGGATTGCATTGATTCTGAAGAAGAAAATATGGAGACAAGTTTACTTGGAAGAATAAACTCAGCTGCAATATGGTCTAGAACTGAAAGTGCAGTTCCAAATAGAGATCATCTTACTTTTGAAGAAATTAGAATGTTTAGTTATAATTCTAAGGTGTCTACAAGTGGCTCAAATTACATTCCAACATCAGATTCAGATGTCATTCAGGATGGCCGGTAA 2070 0.3899 MPQLKLLVILLHIVTCVSTTEFVYNTNFNSTNIDLYGNATINKSILTLTNGTSASFAIARAFYPFIVPTKQPNSSALLPFATSFIFSLAPIENFITGHGFAFIFTPSRSLNGTTSTEYFGLLNYTNEDNHNDHIFGVEFDVVKNEEFEDINDNHVGIDIDSLRSLTSHTAGYWDGKDGKKFKVLNIKSGENYQVWIEFIQYQLNVTMAPAGRKRPNVPLISTNLSLYKVLGSETSVGFSASNGVKKDSVKILAWSFSNSNFSIGDALVTDNLPSFVPYKGWFSGAKAIAVEVASVFCLLTIGCGCIVFFILYRGKKGEEEIEEWELEYWPHRISFQEIHAATGGFPEENVVAVGGNGKVYKGILQGVEVAVKRIPQEREDGMREFLAEVSSIGRMKHRNLVGFRGWCKEGNGNLILVYDFMNNGCLDKWIFECEEGKMLTWEERVQVLKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHGQVASTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILMLEVICGRRPIEEHKLGLIEWVESLMVLDQLHNACDERLKARGGYPIEEAERLLHLGLLCSNSDPSVRPIMRQVVKILEGEKDCIDSEEENMETSLLGRINSAAIWSRTESAVPNRDHLTFEEIRMFSYNSKVSTSGSNYIPTSDSDVIQDGR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01716 689 SUPERFAMILY Protein kinase-like (PK-like) 322 615 IPR011009 -
Vifa1g01716 689 FunFam L-type lectin-domain containing receptor kinase V.9 18 266 - -
Vifa1g01716 689 Pfam Protein kinase domain 352 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01716 689 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 306 420 - -
Vifa1g01716 689 Gene3D - 17 260 - -
Vifa1g01716 689 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01716 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 259 IPR013320 -
Vifa1g01716 689 Gene3D Phosphorylase Kinase; domain 1 312 420 - -
Vifa1g01716 689 PANTHER - 37 618 - -
Vifa1g01716 689 CDD lectin_legume_LecRK_Arcelin_ConA 20 259 IPR001220 GO:0030246
Vifa1g01716 689 Pfam Legume lectin domain 20 260 IPR001220 GO:0030246
Vifa1g01716 689 CDD STKc_IRAK 354 616 - -
Vifa1g01716 689 SMART serkin_6 345 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01716 689 Gene3D Transferase(Phosphotransferase) domain 1 421 637 - -
Vifa1g01716 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vifa1g01716 689 FunFam L-type lectin-domain containing receptor kinase S.4 421 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01716 Vifa-Chr1 280689512 280691581 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01716 17 562 Receptor kinase-like Gene Family AT4G04960 55.957 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g01716 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01716 - - gmx:100776006 988.408