Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01715 ATGAAGCACCACCGTGTCTCCGCCTTGGTTCTTTTAAGCCTATGTTTCATTCTCGCTCAAGTACAGTCTAAGCAAAGCAGTGTCCAGCTCGACACACATTGGCACCCGGGAACCGCTACCTGGTACGGCGAGGCTGAGGGAGACGGTAGCACAGGAGGGGCGTGTGGGTACGGTAATTTGGTGGACGTGAAGCCGTTAAGGGCAAGAGTAGGGGCAGTGGGGCCAGTGCTGTATAAGAAGGGAGAAGGGTGCGGAGAGTGTTATAAGGTCAAGTGTTTGGACCATAAAATATGTTCAAAGCGGGCAGTGACGGTTATAATAACAGATGATTGCCCTGGCTGCCCGTCTGACCGAACACACTTCGACCTCAGTGGTGCTGCTTTTGGTCGCATGGCTGTTTCCGGTGAGAATGGTCAGCTCAGAAATAGAGGTGAAATTCCAGTTGTTTATAGAAGAACAACATGCTTATACACTGGCAAAAATATTGCCTTCCAAGTTAATGAAGGCTCCACGCCATTTTGGTTGTCACTTCTTGTGGAGTTTGAAGATGGAGATGGGGACATAGGCTCCATGCTTATACAAGAAGCTGGGTCTAGTGAGTGGCTGCAAATGAAACATCTATGGGGTGCAAATTGGTGCATTACTGCTGGACCTTTGAGAGGACCTTTTTCTGTTAAACTAAGCACTTCAAGTGGGAGAAGCCTCACTGCTAAGGATGTTATTCCAACTAATTGGTCTCCAAAATCAACTTATACTTCTCGGTTAAATTTCTCTCCTTAA 780 0.4744 MKHHRVSALVLLSLCFILAQVQSKQSSVQLDTHWHPGTATWYGEAEGDGSTGGACGYGNLVDVKPLRARVGAVGPVLYKKGEGCGECYKVKCLDHKICSKRAVTVIITDDCPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVVYRRTTCLYTGKNIAFQVNEGSTPFWLSLLVEFEDGDGDIGSMLIQEAGSSEWLQMKHLWGANWCITAGPLRGPFSVKLSTSSGRSLTAKDVIPTNWSPKSTYTSRLNFSP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01715 259 Gene3D - 157 258 IPR036749 -
Vifa1g01715 259 Gene3D - 18 155 IPR036908 -
Vifa1g01715 259 SMART dpbb_1 70 150 IPR007112 -
Vifa1g01715 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Vifa1g01715 259 FunFam Expansin B3 20 156 - -
Vifa1g01715 259 SUPERFAMILY Barwin-like endoglucanases 30 159 IPR036908 -
Vifa1g01715 259 Pfam Lytic transglycolase 75 150 IPR009009 -
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Vifa1g01715 259 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Vifa1g01715 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Vifa1g01715 259 PANTHER EXPANSIN-B3 14 257 - -
Vifa1g01715 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 160 IPR007112 -
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 209 226 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Vifa1g01715 259 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Vifa1g01715 259 FunFam Beta-expansin 3 157 258 - -
Vifa1g01715 259 CDD DPBB_EXPB_N 34 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01715 Vifa-Chr1 280685428 280687004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01715 9 195 Expansin Gene Family AT4G28250 65.285 4.54e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01715 K20628 - gmx:100780112 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01715 1 280685428 280687004 Vifa1g01715 1 280685428 280687004 ECH