Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01712 ATGTCTCTTCTTTCTTTCTTCTTTCTACCTTTGACGCTCTTCTTCGTATTGGGTATTTCGTTTTTCGATGTTTTCATAACCGCTTCCACTGAATTTGACTTCGGAACGTTAACTCTCACGAGCCTCAAACTTCTCGGTGATGCTCATTTAAACAACGCCACCGTTACTCTCACACGTGACCTCACCGTTCCTTTCTCCGGCGCCGGTCAAGCTCTTTATTCCCGTCCTGTCAGATTCCGGCAACCGGGTTCCAATATCCCGGCGAGTTTTACCACTTTTTTCTCTTTTTCTGTGACCAATTTGAACCCTTCTTCCATCGGTGGTGGTCTCGCGTTTGTGATTACACCTGATGATGATTCACTCGGTGACGCTGGGGGTTATCTTGGTCTTGCTGCTGATGGGTTTGTGGCGGTTGAATTTGATACCCTAATGGACGTTGAATTTAAGGATATTAATGGGAACCATGTTGGGGTTGATCTTAATAGTGTTGTTTCGAATAAAGTTGGTGACTTGGATTCAATTGGGATCGATCTTAAGAGTGGTGACACGGTGAATGCGTGGATTGATTATGATGGATCCAGTAATGAGTTTAATGTTTGGGTTTCTTATTCTAATCTTAAACCGGAAGTTCCAATTTTGTCTATGAATCTTGATATGGGTCAGTACTTGAGTGATTTTATGTATGTTGGGTTTTCTGGTTCAACTCAAGGGAGTACAGAGATTCATAGGGTTGAATGGTGGAGTTTTAGCTCGTCTTTTGTTTCGCTGGGTGATCCTTCCGGTTTGCCACCTCCTCCGGCTGTTAGTTTGATGAATACTACGGCGAATTCGGCGAGGGCATCGCCTCCTTCTATGGCTCCTTCGATGAATCATTCAAATGATGAAAGAAAGGAGAGTAAGAAGAATTGTCACAATGGGTTGTGTAAGCAGGGTTTGGGAGCTGTTGCTGGTGTTGTTACTGCTGGTGCTTTTGTTTTAGCACTTTTTGCTGGCGCTATGATTTGGTTTTATTCTAAGAAAGTGAAGCGTGTGAGTAGATTTGATTCTCTTGGATCAGAGATAATCAAGATGCCTAAGCAGTTTAGCTACAAGGAGCTTAAGACTGCTACAAAGTGTTTCAATGCTAATAGGATCATTGGTCATGGTGCATTTGGGACTGTTTATAAGGGAATTTTGACTGAGAATGGTGACATTATTGCTGTGAAGAGGTGTAGTCATAGTAGTCAAGGTAAGAATGAGTTTTTATCTGAGTTGTCTATAATTGGTAGCCTTAGACATAGGAATCTTGTTAGACTTCAAGGATGGTGTCATGAGAAAGGTGAGATTTTGTTGGTGTATGATTTGATGCCTAATGGTAGTTTGGACAAGGCTTTGTTTGAGGCTAGAACGCCTCTTCCGTGGCCTCACCGCCGAAAGATTTTGTTGGGCGTGGCGTCTGCTTTGGCTTACTTGCATCAAGAGTGTGAAAATCAGGTAATTCATAGAGATATTAAGACTAGTAATATTATGTTAGATGAAGGGTTTAATGCACGTTTGGGAGATTTCGGATTAGCTAGACAAACTGAGCATGACAAGTCTCCAGACGCCACGGTGGCTGCTGGAACAATGGGGTATCTAGCACCTGAGTATCTCCTTACAGGTAAAGCCACTGAGAAAACCGACGTGTTTAGTTATGGCGCCGTGGTTCTTGAGGTGGCAAGTGGGAGGAGACCCATAGAGAAGGATGCTGCTGGGGTTGGAAAAGTTGGAGTGAGTAGCAATTTGGTGGAATGGGTTTGGAGTTTACACAGGGAAGGAAGGTTGCTAATGGCGGCTGATCCAAGGCTCGAGGGCAGGTTTGATGAAGCAGAGATGAGAAGGGTGCTCCTGGTTGGGCTCGCTTGCTCACACCCTGATTCTTTGTCTAGACCAACAATGAGAGGCGTGGTTCAAATGCTAGGGGGTGAAACCGAAGTGCCAATTGTCCCGAGAACAAAGCCTTCTACCGGTCTCAATATTTCGCACTCTCGCCTCTTAATAAGCTTGCAAGATAGTGTATCTGACTGTGGTGATGGTATAATCTCCATTTCTACTTCCACATCCGAGAACAGCTTCAATGGCAGAGATATAGTTTAA 2115 0.4402 MSLLSFFFLPLTLFFVLGISFFDVFITASTEFDFGTLTLTSLKLLGDAHLNNATVTLTRDLTVPFSGAGQALYSRPVRFRQPGSNIPASFTTFFSFSVTNLNPSSIGGGLAFVITPDDDSLGDAGGYLGLAADGFVAVEFDTLMDVEFKDINGNHVGVDLNSVVSNKVGDLDSIGIDLKSGDTVNAWIDYDGSSNEFNVWVSYSNLKPEVPILSMNLDMGQYLSDFMYVGFSGSTQGSTEIHRVEWWSFSSSFVSLGDPSGLPPPPAVSLMNTTANSARASPPSMAPSMNHSNDERKESKKNCHNGLCKQGLGAVAGVVTAGAFVLALFAGAMIWFYSKKVKRVSRFDSLGSEIIKMPKQFSYKELKTATKCFNANRIIGHGAFGTVYKGILTENGDIIAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDAAGVGKVGVSSNLVEWVWSLHREGRLLMAADPRLEGRFDEAEMRRVLLVGLACSHPDSLSRPTMRGVVQMLGGETEVPIVPRTKPSTGLNISHSRLLISLQDSVSDCGDGIISISTSTSENSFNGRDIV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01712 704 MobiDBLite consensus disorder prediction 272 302 - -
Vifa1g01712 704 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Vifa1g01712 704 FunFam L-type lectin-domain containing receptor kinase VIII.1 28 260 - -
Vifa1g01712 704 Pfam Legume lectin domain 30 252 IPR001220 GO:0030246
Vifa1g01712 704 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Vifa1g01712 704 ProSiteProfiles Protein kinase domain profile. 373 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01712 704 Gene3D Transferase(Phosphotransferase) domain 1 449 653 - -
Vifa1g01712 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 255 IPR013320 -
Vifa1g01712 704 SUPERFAMILY Protein kinase-like (PK-like) 355 662 IPR011009 -
Vifa1g01712 704 MobiDBLite consensus disorder prediction 272 290 - -
Vifa1g01712 704 FunFam L-type lectin-domain containing receptor kinase VIII.1 337 448 - -
Vifa1g01712 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Vifa1g01712 704 SMART serkin_6 373 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01712 704 Gene3D Phosphorylase Kinase; domain 1 337 448 - -
Vifa1g01712 704 CDD lectin_legume_LecRK_Arcelin_ConA 46 244 IPR001220 GO:0030246
Vifa1g01712 704 Pfam Protein kinase domain 374 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01712 704 CDD STKc_IRAK 379 646 - -
Vifa1g01712 704 FunFam L-type lectin-domain containing receptor kinase VIII.1 449 664 - -
Vifa1g01712 704 PANTHER - 52 653 - -
Vifa1g01712 704 Gene3D - 28 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01712 Vifa-Chr1 280503380 280505494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01712 1 682 Receptor kinase-like Gene Family AT3G53380 68.058 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g01712 Pkinase 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01712 - - gmx:100810624 1046.96