Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g01709 | ATGCCCACCGCCAAATTATTCATCTCTCTCCTCTGTTTCTCTCTCCTCACTCTCTCCGTCACCGCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAACCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGATCTCGACCCTGGATCATGGCGCCAAATCTTCGAACCAACCTCCACCCAACCGCAACCTCAACCTCAATCCGATACGGAGGCTCTCTACTACTCCGCCGTGACCAAGCTTATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGCGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACTCAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTTCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTACAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGTAAGAGCCCGATGTCAATATGATTCTCTCCTGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGAGGGATGATTTCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAACAGTTAAAGACAAGCCTCTAACTTTCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGGTTCAATGGAATTCCAGAGGTCAACCAATCAAGCATAATAGCAAGACTTTTTCTAGTTTCATTGGTGTCACAGTTCGTCGGAGAAGTTAA | 1599 | 0.4528 | MPTAKLFISLLCFSLLTLSVTARPYVLVLSQEDFKDEPPSDPDSSPEWDEFGDSDSHKSEEDLDPGSWRQIFEPTSTQPQPQPQSDTEALYYSAVTKLMTGDARLIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLLNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAASMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTTAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLVRARCQYDSLLGVGYLHENKPSPIIHRDLEPSNILRDDFGHLKVADFGVSKLLTVKDKPLTFQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEVQWNSRGQPIKHNSKTFSSFIGVTVRRRS | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g01709 | 532 | PANTHER | ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED | 4 | 409 | IPR044623 | GO:0030433 | |
| Vifa1g01709 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 410 | 506 | IPR011009 | - | |
| Vifa1g01709 | 532 | SUPERFAMILY | HCP-like | 221 | 330 | - | - | |
| Vifa1g01709 | 532 | Gene3D | Tetratricopeptide repeat domain | 314 | 409 | IPR011990 | GO:0005515 | |
| Vifa1g01709 | 532 | ProSiteProfiles | Protein kinase domain profile. | 283 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vifa1g01709 | 532 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
| Vifa1g01709 | 532 | SUPERFAMILY | HCP-like | 315 | 406 | - | - | |
| Vifa1g01709 | 532 | Gene3D | Tetratricopeptide repeat domain | 202 | 313 | IPR011990 | GO:0005515 | |
| Vifa1g01709 | 532 | SMART | serkin_6 | 345 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vifa1g01709 | 532 | MobiDBLite | consensus disorder prediction | 33 | 86 | - | - | |
| Vifa1g01709 | 532 | SUPERFAMILY | HCP-like | 113 | 186 | - | - | |
| Vifa1g01709 | 532 | MobiDBLite | consensus disorder prediction | 50 | 67 | - | - | |
| Vifa1g01709 | 532 | Coils | Coil | 207 | 227 | - | - | |
| Vifa1g01709 | 532 | FunFam | ERAD-associated E3 ubiquitin-protein ligase component HRD3A | 209 | 316 | - | - | |
| Vifa1g01709 | 532 | Gene3D | Transferase(Phosphotransferase) domain 1 | 410 | 526 | - | - | |
| Vifa1g01709 | 532 | Gene3D | Tetratricopeptide repeat domain | 101 | 200 | IPR011990 | GO:0005515 | |
| Vifa1g01709 | 532 | SMART | sel1 | 122 | 157 | IPR006597 | - | |
| Vifa1g01709 | 532 | SMART | sel1 | 277 | 312 | IPR006597 | - | |
| Vifa1g01709 | 532 | SMART | sel1 | 240 | 276 | IPR006597 | - | |
| Vifa1g01709 | 532 | SMART | sel1 | 350 | 385 | IPR006597 | - | |
| Vifa1g01709 | 532 | SMART | sel1 | 313 | 349 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Sel1 repeat | 278 | 310 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Sel1 repeat | 122 | 157 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Sel1 repeat | 240 | 275 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Sel1 repeat | 353 | 384 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Sel1 repeat | 314 | 348 | IPR006597 | - | |
| Vifa1g01709 | 532 | Pfam | Protein kinase domain | 417 | 506 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g01709 | Vifa-Chr1 | 280406531 | 280411177 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g01709 | 407 | 504 | MAP Kinase Kinase Kinase | AT4G18950 | 72.727 | 8.65e-39 | 145 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | TKL-Pl-5 | Vifa1g01709 | Pkinase | 1.1e-20 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g01709 | K14026 | - | psat:127101456 | 775.007 |