Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01708 ATGCCCACCGCCAAATTATTCATCTCTCTCCTCTGTTTCTCTCTCCTCACTCTCTCCGTCACCGCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAACCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGATCTCGACCCTGGATCATGGCGCCAAATCTTCGAACCAACCTCCACCCAACCGCAACCTCAACCTCAATCCGATACGGAGGCTCTCTACTACTCCGCCGTGACCAAGCTTATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGCGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACTCAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTTCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTACAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGAGGGATGATTTCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAACAGTTAAAGACAAGCCTCTAACTTTCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGGTTCAATGGAATTCCAGAGGTCAACCAATCAAGCATAATAGCAAGACTTTTTCTAGTTTCATTGGTGTCACAGTTCGTCGGAGAAGTTAA 1479 0.4557 MPTAKLFISLLCFSLLTLSVTARPYVLVLSQEDFKDEPPSDPDSSPEWDEFGDSDSHKSEEDLDPGSWRQIFEPTSTQPQPQPQSDTEALYYSAVTKLMTGDARLIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLLNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAASMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTTAKEYFEKAAENDEWLPTMVNQRLSTNLQRFFILVLASRRTFHWGVGYLHENKPSPIIHRDLEPSNILRDDFGHLKVADFGVSKLLTVKDKPLTFQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEVQWNSRGQPIKHNSKTFSSFIGVTVRRRS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01708 492 ProSiteProfiles Protein kinase domain profile. 229 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01708 492 SUPERFAMILY HCP-like 221 350 - -
Vifa1g01708 492 SUPERFAMILY Protein kinase-like (PK-like) 379 466 IPR011009 -
Vifa1g01708 492 SUPERFAMILY HCP-like 113 186 - -
Vifa1g01708 492 MobiDBLite consensus disorder prediction 70 86 - -
Vifa1g01708 492 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 206 316 - -
Vifa1g01708 492 MobiDBLite consensus disorder prediction 33 86 - -
Vifa1g01708 492 MobiDBLite consensus disorder prediction 50 67 - -
Vifa1g01708 492 Coils Coil 207 227 - -
Vifa1g01708 492 SMART serkin_6 281 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01708 492 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 349 IPR044623 GO:0030433
Vifa1g01708 492 Pfam Sel1 repeat 314 348 IPR006597 -
Vifa1g01708 492 Pfam Sel1 repeat 122 157 IPR006597 -
Vifa1g01708 492 Pfam Sel1 repeat 278 310 IPR006597 -
Vifa1g01708 492 Pfam Sel1 repeat 240 275 IPR006597 -
Vifa1g01708 492 Gene3D Tetratricopeptide repeat domain 55 190 IPR011990 GO:0005515
Vifa1g01708 492 Gene3D Tetratricopeptide repeat domain 203 357 IPR011990 GO:0005515
Vifa1g01708 492 Gene3D Transferase(Phosphotransferase) domain 1 358 484 - -
Vifa1g01708 492 SMART sel1 122 157 IPR006597 -
Vifa1g01708 492 SMART sel1 277 312 IPR006597 -
Vifa1g01708 492 SMART sel1 240 276 IPR006597 -
Vifa1g01708 492 SMART sel1 313 349 IPR006597 -
Vifa1g01708 492 Pfam Protein kinase domain 380 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01708 Vifa-Chr1 280406531 280411177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01708 380 464 MAP Kinase Kinase Kinase AT4G18950 80.233 1.78e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa1g01708 Pkinase 2.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01708 K14026 - psat:127101456 655.21