Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01699 | ATGGCTTTAAATCAGTATTTTGCTGAGGGTGTGAACCAAATTGATTCATTGGAAGATAAATCATCTCAGGAAATATGGAAATGTTCTGGTGCTGAAGCGATTTCAGGTTCGAGTGGCTTTGACTGCAACATATGTCTGGAGTGTGTGCAAGATCCGGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACCAAGCTCAAGAGAAGCAGAAGGAAAAGCCGCAATGTCCAGTATGCAAATCAGAAATTTCAAAATCATCACTTGTTCCGCTCTACGGTCGCGGCCAAACCTCACCGCCTTCCAAAGGCAATGCTCAGCAAGTGAGTAGTGTCATACCGCCGAGACCGCCTAGTCTTTCGTGGATGACTAACTTACCAAGATCACTCGATGCTGCAACTGTTTCACAAAACACTTCTCAGGTTTATCATCCTCATTATCATAATCATACTCAACGAGGCTCTTCACCAATGCTTAACACTGGTGGTTCACTGACCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAGATGATATATGCGAGGATCTTTGGAAACCAAGTGACAGACATTTATACATACCCGGATTCTTACAATCTTTCGGGGATCAGTAATCCTAGGATCAGAAGACATTTGAGGCGAGCTGATAAGTCACTTGGTAGAATCTGTTTCTTCCTCCTTTGTTGCACAGTTTTGTTTCTTCTCTTATTTTGA | 735 | 0.4313 | MALNQYFAEGVNQIDSLEDKSSQEIWKCSGAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNQAQEKQKEKPQCPVCKSEISKSSLVPLYGRGQTSPPSKGNAQQVSSVIPPRPPSLSWMTNLPRSLDAATVSQNTSQVYHPHYHNHTQRGSSPMLNTGGSLTNPLDTSYGVFGEMIYARIFGNQVTDIYTYPDSYNLSGISNPRIRRHLRRADKSLGRICFFLLCCTVLFLLLF | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01699 | 244 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 21 | 241 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vifa1g01699 | 244 | SMART | ring_2 | 42 | 86 | IPR001841 | - | |
Vifa1g01699 | 244 | SUPERFAMILY | RING/U-box | 38 | 99 | - | - | |
Vifa1g01699 | 244 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 119 | IPR013083 | - | |
Vifa1g01699 | 244 | ProSitePatterns | Zinc finger RING-type signature. | 57 | 66 | IPR017907 | - | |
Vifa1g01699 | 244 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 87 | IPR001841 | - | |
Vifa1g01699 | 244 | Pfam | Zinc finger, C3HC4 type (RING finger) | 42 | 86 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01699 | Vifa-Chr1 | 278600078 | 278600812 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01699 | 24 | 244 | C3H Transcription Factor Family | AT4G28270 | 37.607 | 5.46e-40 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01699 | K10666 | - | gmx:100785491 | 304.679 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g01699 | 1 | 278600078 | 278600812 | Vifa1g01699 | 1 | 278600078 | 278600812 | ECH |