Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01699 ATGGCTTTAAATCAGTATTTTGCTGAGGGTGTGAACCAAATTGATTCATTGGAAGATAAATCATCTCAGGAAATATGGAAATGTTCTGGTGCTGAAGCGATTTCAGGTTCGAGTGGCTTTGACTGCAACATATGTCTGGAGTGTGTGCAAGATCCGGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACCAAGCTCAAGAGAAGCAGAAGGAAAAGCCGCAATGTCCAGTATGCAAATCAGAAATTTCAAAATCATCACTTGTTCCGCTCTACGGTCGCGGCCAAACCTCACCGCCTTCCAAAGGCAATGCTCAGCAAGTGAGTAGTGTCATACCGCCGAGACCGCCTAGTCTTTCGTGGATGACTAACTTACCAAGATCACTCGATGCTGCAACTGTTTCACAAAACACTTCTCAGGTTTATCATCCTCATTATCATAATCATACTCAACGAGGCTCTTCACCAATGCTTAACACTGGTGGTTCACTGACCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAGATGATATATGCGAGGATCTTTGGAAACCAAGTGACAGACATTTATACATACCCGGATTCTTACAATCTTTCGGGGATCAGTAATCCTAGGATCAGAAGACATTTGAGGCGAGCTGATAAGTCACTTGGTAGAATCTGTTTCTTCCTCCTTTGTTGCACAGTTTTGTTTCTTCTCTTATTTTGA 735 0.4313 MALNQYFAEGVNQIDSLEDKSSQEIWKCSGAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNQAQEKQKEKPQCPVCKSEISKSSLVPLYGRGQTSPPSKGNAQQVSSVIPPRPPSLSWMTNLPRSLDAATVSQNTSQVYHPHYHNHTQRGSSPMLNTGGSLTNPLDTSYGVFGEMIYARIFGNQVTDIYTYPDSYNLSGISNPRIRRHLRRADKSLGRICFFLLCCTVLFLLLF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01699 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 241 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa1g01699 244 SMART ring_2 42 86 IPR001841 -
Vifa1g01699 244 SUPERFAMILY RING/U-box 38 99 - -
Vifa1g01699 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 119 IPR013083 -
Vifa1g01699 244 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Vifa1g01699 244 ProSiteProfiles Zinc finger RING-type profile. 42 87 IPR001841 -
Vifa1g01699 244 Pfam Zinc finger, C3HC4 type (RING finger) 42 86 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01699 Vifa-Chr1 278600078 278600812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01699 24 244 C3H Transcription Factor Family AT4G28270 37.607 5.46e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01699 K10666 - gmx:100785491 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01699 1 278600078 278600812 Vifa1g01699 1 278600078 278600812 ECH