Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01689 ATGAAGAAAAACATCATAGTACTAAACCCTTTATCTTTTTCTCTCTTCCTCTTCATTATTACCCTCTTCACTCACTCCCAAAACGACGACGCTTTAGTCATGCTATCTCTCAAAAAAGCTATCAACCCACCCGCTTCACTCGGTTGGTCCGACCCGGATCCATGTAAGTGGACCCACGTTTCATGCTCCGACGACAACCGCGTTACTCGAGTCCAAATCGGTCGTCAGAATCTCCACGGCACACTCCCTCAGAATCTCCACAACTTAACCGAGTTACAACACTTGGAGCTTCAGTTCAACAATTTCTCGGGTCCTCTCCCGAGTTTAAACGGGTTAAACTCTCTTCAAGTTTTCATGGCGAGTAGTAACAGTTTTACTTTAATTCCCGGTGATTTTTTTGCTGGTTTGTCTCAGCTTGTTTCTGTAGAGATCGATGATAACCCTTTTGAGCCTTGGGAGATTCCTGACTCGCTTAAAGATGCTTCTTCGCTTCAGAATTTTTCTGCTAACAATGCTAATGTTAAGGCTTTTAATAAGATTGAGGGTGTGTTGCCGAAGAGCTTTTCTGGTTTAAAGGTTGAGTCTTTGTGGTTGAATGGTCAGAAGAGTGATGGTAAGCTTACTGGGTCGGTTGAGGTTTTGCAGAATATGACTTCTTTGACTGAGGTTTGGTTGCATTCTAATGCTTTTAATGGTCCTTTACCTGGTTTTCAAGGGTTGAAAGATTTAGAGGTTTTGAGTTTAAGGGATAACTCTTTCACTGGTGTTGTTCCTAGTTCGTTGGTTAGCTTGAAGTCGCTTAAAGTTGTGAACTTGACTAATAACTATTTTCAGGGTCCAGTGCCTGTTTTTGGTGCTGGGGTTGAGGTTGATAATGTTAAGGATTCTAATAGCTTTTGTTTGTCTCGTCCGGGTGATTGTGATCCTAGGGTGCAGGTGCTTCTTTCTGTTGTTGGGGTTATGGGTTATCCTTTGAAGTTTGCTGAGAGTTGGAAGGGGAATGATCCTTGTGTTAATTGGATTGGGATTACTTGCAGTGATGGGAACATTAGTGTTGTTAATTTTCAAAAGATGGGTCTTAGTGGTGTGATATCTCCGGAGTTTGCTAAGCTTAAGTCGCTGCAAAGACTTATTCTTTCGGATAACAATATCACTGGTTTGATTCCTAATGAGCTTACTACTTTGCCTATGCTAACTCAATTGAACGTTGCAAACAATCATCTCTATGGTAAAACACCTAGTTTTAAGAGGAATGTGATTGTGACTACTAGTGGGAACGTTGATATTGGGAAGGATAAGAGCAGTCTTTCACCTCAGGGTTCACTGTCTCCTAATGGTACCGATGCGAATGGAGGAAATGGTGGGAGTTCTGGAAATGGCGGCAAAAAGTCTTCTTCTCATGTAGGATTGATAGTGTTTGCTGTGGTTGGTGCAGTTTTTGTGGCCTCTTTGATTGGTTTCTTTGTTTTCTGCTTGCTAAGGATGAAGCAAAAGAAGTTAAGTAGGGTTCAGAGTCCGAATGCACTAGTTATTCACCCTCGGCATTCTGGATCAGATAACGAAAGTGTGAAGATAACAGTTGCAGGTTCGAGTGTCAGTGTTGGAGGTGTGAGTGAAGGCCACGCCATTCCCAACAGTGAGGTGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTCATTTCAATACAGGTTTTAAGGAGTGTCACTAACAATTTCAGCGAGAAAAATATATTGGGACAAGGAGGTTTTGGGACGGTTTATAAAGGTGAACTCCATGATGGTACACGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAGCCGGGAAGGGTGCGTCAGAATTTAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGTCACCGACATCTTGTTGCTCTTCTCGGATACTGCTTGGATGGGAACGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGAACCCTAAGTAGGTATATTTTTAATTGGCCGGATGAAGGGCTCGAACCACTTGCGTGGGATAGGAGATTGATCATTGCCTTAGATGTCGCAAGGGGTGTTGAGTACCTTCATAGCTTGGCTCATCAAAGCTTCATACACAGAGACTTGAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTCGCAGATTTTGGTCTAGTGCGCCTTGCTCCCGAAGGGAAAGCATCAATTGAAACAAGAATTGCAGGAACTTTTGGATATTTAGCTCCGGAATATGCAGTTACCGGCCGCGTGACAACTAAAGTTGACGTGTTCAGCTTTGGAGTAATACTGATGGAGCTCATAACTGGAAGAAAAGCACTTGACGAGAGCCAACCCGAGGATAGCATGCACCTTGTAGCATGGTTCCGAAGAATGTACTTAGATAAGGATTCATTCCGCAAGTCCATCGACCCCACAATTGATATCAATGAGGAAACACTTGCGAGTATTCACACTGTAGCAGAGTTAGCTGGTCACTGCAGTGCAAGGGAGCCATATCAAAGACCAGACATGGGCCACGCAGTTAACGTTCTTTCATCTCTTGTTGAACAATGGAAACCGTCTGATTTGAATTCCGAAGATATATATGGTATCGACCTTGACTTGTCTTTACCACAAGCACTCAAGAAATGGCAGGCTTATGAAGGTGCAAGTCAATTGGAGTCTACTTCTTCTTCTTCGCTTCTTCCAAGTTTGGATAACACGCAAACAAGTATACCTACTCGTCCATATGGATTTGCCGATTCTTTCACGTCGGCAGATGGGAGGTGA 2784 0.4325 MKKNIIVLNPLSFSLFLFIITLFTHSQNDDALVMLSLKKAINPPASLGWSDPDPCKWTHVSCSDDNRVTRVQIGRQNLHGTLPQNLHNLTELQHLELQFNNFSGPLPSLNGLNSLQVFMASSNSFTLIPGDFFAGLSQLVSVEIDDNPFEPWEIPDSLKDASSLQNFSANNANVKAFNKIEGVLPKSFSGLKVESLWLNGQKSDGKLTGSVEVLQNMTSLTEVWLHSNAFNGPLPGFQGLKDLEVLSLRDNSFTGVVPSSLVSLKSLKVVNLTNNYFQGPVPVFGAGVEVDNVKDSNSFCLSRPGDCDPRVQVLLSVVGVMGYPLKFAESWKGNDPCVNWIGITCSDGNISVVNFQKMGLSGVISPEFAKLKSLQRLILSDNNITGLIPNELTTLPMLTQLNVANNHLYGKTPSFKRNVIVTTSGNVDIGKDKSSLSPQGSLSPNGTDANGGNGGSSGNGGKKSSSHVGLIVFAVVGAVFVASLIGFFVFCLLRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGVSEGHAIPNSEVGDIQMVEAGNMVISIQVLRSVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMECGAIAGKGASEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRYIFNWPDEGLEPLAWDRRLIIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEDSMHLVAWFRRMYLDKDSFRKSIDPTIDINEETLASIHTVAELAGHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDLNSEDIYGIDLDLSLPQALKKWQAYEGASQLESTSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01689 927 Gene3D Ribonuclease Inhibitor 309 433 IPR032675 -
Vifa1g01689 927 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Vifa1g01689 927 Pfam Leucine rich repeat N-terminal domain 311 346 IPR013210 -
Vifa1g01689 927 CDD STKc_IRAK 579 852 - -
Vifa1g01689 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Vifa1g01689 927 FunFam Leucine-rich repeat receptor-like kinase 309 432 - -
Vifa1g01689 927 Gene3D Phosphorylase Kinase; domain 1 536 650 - -
Vifa1g01689 927 FunFam receptor protein kinase TMK1 536 650 - -
Vifa1g01689 927 MobiDBLite consensus disorder prediction 895 916 - -
Vifa1g01689 927 SUPERFAMILY L domain-like 44 416 - -
Vifa1g01689 927 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01689 927 SMART LRR_typ_2 371 394 IPR003591 -
Vifa1g01689 927 SMART LRR_typ_2 217 239 IPR003591 -
Vifa1g01689 927 SMART LRR_typ_2 240 263 IPR003591 -
Vifa1g01689 927 SMART LRR_typ_2 112 135 IPR003591 -
Vifa1g01689 927 Gene3D Transferase(Phosphotransferase) domain 1 651 869 - -
Vifa1g01689 927 PANTHER OSJNBA0070M12.3 PROTEIN 13 927 - -
Vifa1g01689 927 Pfam Leucine rich repeat 367 408 IPR001611 GO:0005515
Vifa1g01689 927 MobiDBLite consensus disorder prediction 895 927 - -
Vifa1g01689 927 Gene3D Ribonuclease Inhibitor 27 307 IPR032675 -
Vifa1g01689 927 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01689 927 Pfam Protein kinase domain 574 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01689 927 MobiDBLite consensus disorder prediction 430 461 - -
Vifa1g01689 927 FunFam receptor protein kinase TMK1 651 868 - -
Vifa1g01689 927 ProSitePatterns Protein kinases ATP-binding region signature. 579 611 IPR017441 GO:0005524
Vifa1g01689 927 SUPERFAMILY Protein kinase-like (PK-like) 549 857 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01689 Vifa-Chr1 276199266 276202573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01689 68 842 Receptor kinase-like Gene Family AT1G55610 29.080 5.66e-77 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa1g01689 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01689 K00924 - gmx:100305404 1437.17