Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01683 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAATTGGACGTATTGGTTCGCGTAAGTATCCTCGTAAAATACCAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTAAGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCTAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGATCAAGGCATGCAACGAGCAGACGTCATGATAAAAGGTCCCGGTCTAGGAAGAGAGGCGACATTAAGAGCTATTTCTGGAAGTCGGATACGAGTAAGGGTTATACAGGATGTAACCCCTATGCCACATAATGGATGTCAAGCAGATACAATAGGCATTGCAATGCGAAGAATTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAATAGGTTCTGGATATGTAACTGCTCAAGACATCATTTTACCACCTTCGGTGGAAGTCATTGATAATACACAACATATAGCTAACCTAACAGAACCTATTAATTTGTGTATTGAATTAGAAATTGATAGAAAGCGGGGATATCGTATAAAAATACTAAACAACATTCAAGATGGAAGTTATACTATAGATGATGTATTCATGCCTGTTAGAAATGCAAATCATAGTATTCATTCTTATGTGAATGGAAATGAAAAACAAGAGATACTAGTTCTCAAAATATGGACAAATGGAAGTAATGTTGCTCCAATACCCAACCAAAGAGCCACGACAGCACCAATCAAAAAGACGGTTGTTGCTACTGGATGCCGAAATGGGTTTTGGAACTTATTCATATTCTCCAAAAAAGACGATTTGGAAGATATAATTGGGGGACATGTATGGTTGGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTTAACCAAACCTTTTGCACGGGCTCGGCGTGCACTAGTATGGTCTGGAGAAGCTTACTTATCTTATAGTTTAGGTGCTTTAGCCGTTTTTGGTTTTATAGCTTGTTGCTTTGTCTGGTTTAATAATACTGCTTATCCTAGTGAGTTTTATGGTCCCACTGGACCGAAAGCTTCTCAAGCTGAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAATGTAGGCTCCGCTCAAGGGCCTACCGGTTTAGGTAAATATCTAATGCATTCTCCGACCGGAGAAGTCATTTTTGGAGGAGAAACTATGCGTTTTTGGGATCTGCGTGCTCCCTGGTTAGAACCTCTAAGAGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATACAACCTTGGCAAGAACGTCGTTCCGCAGAATATATGACTCATGCTCCTTTAGCTGCCGCAGGATTTGAAAAAGGAATTGATAGAGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAATTGA 1500 0.4033 MAKSIPKIGSRKIGRIGSRKYPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAALTAAGNAIQTVVDQGMQRADVMIKGPGLGREATLRAISGSRIRVRVIQDVTPMPHNGCQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIIGSGYVTAQDIILPPSVEVIDNTQHIANLTEPINLCIELEIDRKRGYRIKILNNIQDGSYTIDDVFMPVRNANHSIHSYVNGNEKQEILVLKIWTNGSNVAPIPNQRATTAPIKKTVVATGCRNGFWNLFIFSKKDDLEDIIGGHVWLGSICILGGIWHILTKPFARARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAEAFTFLVRDQRLGANVGSAQGPTGLGKYLMHSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLAAAGFEKGIDRDFEPVLSMTPLN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01683 499 Gene3D photosystem ii from thermosynechococcus elongatus 379 474 IPR044900 -
Vifa1g01683 499 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g01683 499 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g01683 499 Pfam Photosystem II protein 306 479 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Vifa1g01683 499 SUPERFAMILY Translational machinery components 24 131 - -
Vifa1g01683 499 Gene3D - 169 233 IPR036643 -
Vifa1g01683 499 Gene3D - 234 265 IPR036603 GO:0006351|GO:0046983
Vifa1g01683 499 FunFam Photosystem II CP43 reaction center protein 379 474 - -
Vifa1g01683 499 Pfam Ribosomal protein S11 28 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g01683 499 SUPERFAMILY RBP11-like subunits of RNA polymerase 125 265 IPR036603 GO:0006351|GO:0046983
Vifa1g01683 499 SUPERFAMILY Photosystem II antenna protein-like 266 497 IPR036001 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Vifa1g01683 499 Gene3D Ribosomal protein S11 15 134 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vifa1g01683 499 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 149 234 IPR036643 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01683 Vifa-Chr1 275789624 275792539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01683 28 126 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 35.185 8.65e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01683 K02705 - pop:127904143 365.155