Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01668 ATGGGTTGTGTACATTCCAAGAAATCAGCTGTAGTTGACAGCAAGGAAGGTTTAACATCATCTAGCAAAAGGAATGTGGAAAGGAATGTTGATATGAATGTTTCGAGATTGAATACAAAGAAAAATGTTGATGGAGTTTTGAAGAAAGATGAGTTATTGGGCGGTGTTTATGCGAGGGTTTCGTTGAATGATGACAAGGAAGCTGATGGTTCGGCGCGGTTGTATGGGGATGGGGATAAGAATGAGAAGAAGAAAATGGAGAAAACTGAATTGGCTGTTGTTGATTATCCGAGTTTTGGAGGAAGGGTTCCGAAGGGTTTAGAAGGAGAGCAAGTTGCGGCGGGATGGCCAACTTGGCTTTCTTCGGTTGCTGGTGAAGTTATCCATGGATGGATACCACGGAGTGCAAGTACTTTCGAGAAGTATGATAAAATTGGCCAGGGAACTTACAGTACTGTTTTTAAGGCGCGTGATTTGACTACCCAAAAGATTGTTGCATTGAAGCGGGTGCGCTTTGATAATCTTGATCATGAGAGTGTCAATTTCATGGCAAGGGAAATCATTTTTCTGCGTAGGCTTGACCATCCAAATATAATTAAGTTGGAGGGTTTGATAACATCACCAACGTCTCGTAGCATGTATCTTGTTTTTGAATACATGGAACATGATCTTACCGGACTTGCAACAGCACCTGGCGTTAAGTTTTCCGAACCACAGGTTAAATGCTACATGAAGCAGCTTCTTAATGGATTGGATCATTGCCATAGTCGCGGTGTCCTCCATCGTGATATAAAGGGCTCAAATCTTCTCATTGACAATAAAGGCATTTTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGGCCCCGATCATAGTGCCCCATTGACCAGCCGCGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTCGGATCATCAAATTATGGAGTTGAAGTGGATATGTGGAGCACTGGTTGCATACTTGGTGAACTATACTATGGAAGACCTATATTGCCTGGAAAAACCGAGGTTGAGCAATTGCATAGAATTTTTAAACTTTGTGGATCACCGTCTGTGGACTACTGGCGTAAACTGCGGCTGCCACATTCTACAGTATTCAGGCCTCCACACCATTATAGGAATTGTGTTGCAGATACATTTAAAGAATTTCCATCTGCTGCTACGAAGCTTATAGAGACCCTACTCTCTTTAGATCCTATACTTCGAGGAACAGCAGCTACAGCTCTGAATAACGAGTTCTTTTCATTAGAACCTGTTGCTTGCGATCCATCAGAATTGCCAAAATATCCTCCTAGCAAAGAGATTCACACTAAAATGCGGGAAGAATCAACAAGAAGGCACAAAGCTCTTGGGGAAAAGGAGCAAAAAGTTGGACCACGAGTTAGACAAGAGAACGAAACTAAGTCATTTGTCCTATCCAAAGGCAATGCTGATGCTCGCATATCTATGGAGCATGAGCAACGCTTTCCAAACATGACAGGCCAGGATGGGCTGTTCAGCCGCCCCAGAGAGTCTGTATCTGGATTACTGGATTCCCCTCGGAAACAGTCAGCAGATATTATAGAAACGGTGAATTATTTCTCTGGGCCTCTTTATCAGAAACCTTCGCATTCAGGTTTACTCGTTCCAGGTTTGGGCCGGCACAGAGTGGGAAAGGAAGCTGGTGAGCAACCACTTCCTGTTTCAAATAATGTCAACCGATCAAAATATTCAAAACCATCTCCAACTTTGTTTTCTGGAAATCGAAAAGAAAATCCCGCTCCCTTGAGACCAAGAGATACAATTCAAGTACCAAAATCTTTAGGGTTGAGTAATGGATCAGAGTCAAAAAGACGGCATGATAAAAAAGGCCATTCTCAGAAAACTGATCTCAGCAAAACAGGAAATGGAAAGGACCGGCATGCATCCAGCAAAAACAATCTCTATATGATTGGTCCATTGAAGTTTCCATCAAACAATATGCGTCAGATGATCAAAGAGCGCGATCGGAAGCCCCAAGAATATTCAAGATGA 2040 0.4245 MGCVHSKKSAVVDSKEGLTSSSKRNVERNVDMNVSRLNTKKNVDGVLKKDELLGGVYARVSLNDDKEADGSARLYGDGDKNEKKKMEKTELAVVDYPSFGGRVPKGLEGEQVAAGWPTWLSSVAGEVIHGWIPRSASTFEKYDKIGQGTYSTVFKARDLTTQKIVALKRVRFDNLDHESVNFMAREIIFLRRLDHPNIIKLEGLITSPTSRSMYLVFEYMEHDLTGLATAPGVKFSEPQVKCYMKQLLNGLDHCHSRGVLHRDIKGSNLLIDNKGILKIADFGLANFFGPDHSAPLTSRVVTLWYRPPELLLGSSNYGVEVDMWSTGCILGELYYGRPILPGKTEVEQLHRIFKLCGSPSVDYWRKLRLPHSTVFRPPHHYRNCVADTFKEFPSAATKLIETLLSLDPILRGTAATALNNEFFSLEPVACDPSELPKYPPSKEIHTKMREESTRRHKALGEKEQKVGPRVRQENETKSFVLSKGNADARISMEHEQRFPNMTGQDGLFSRPRESVSGLLDSPRKQSADIIETVNYFSGPLYQKPSHSGLLVPGLGRHRVGKEAGEQPLPVSNNVNRSKYSKPSPTLFSGNRKENPAPLRPRDTIQVPKSLGLSNGSESKRRHDKKGHSQKTDLSKTGNGKDRHASSKNNLYMIGPLKFPSNNMRQMIKERDRKPQEYSR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01668 679 FunFam probable serine/threonine-protein kinase At1g54610 126 221 - -
Vifa1g01668 679 SUPERFAMILY Protein kinase-like (PK-like) 132 424 IPR011009 -
Vifa1g01668 679 PANTHER CELL DIVISION PROTEIN KINASE 137 429 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 615 642 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 568 590 - -
Vifa1g01668 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Vifa1g01668 679 Gene3D Transferase(Phosphotransferase) domain 1 222 462 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 563 679 - -
Vifa1g01668 679 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Vifa1g01668 679 FunFam probable serine/threonine-protein kinase At1g54610 222 463 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 446 474 - -
Vifa1g01668 679 Pfam Protein kinase domain 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01668 679 CDD STKc_CDK9_like 139 423 - -
Vifa1g01668 679 SMART serkin_6 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01668 679 MobiDBLite consensus disorder prediction 13 27 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g01668 679 Gene3D Phosphorylase Kinase; domain 1 126 221 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 664 679 - -
Vifa1g01668 679 MobiDBLite consensus disorder prediction 499 521 - -
Vifa1g01668 679 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01668 679 MobiDBLite consensus disorder prediction 446 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01668 Vifa-Chr1 273353279 273356379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01668 131 472 Core Cell Cycle Gene Families AT5G10270 47.207 7.38e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa1g01668 Pkinase 4.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01668 - K08819 gmx:100781209 907.516