Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01667 ATGTCTTTCTCTCTCACCGACGGTTGCAAGAAGAGAAAACGGTGGCCCAAGATTTTCCGGCTACAATCTTTCGCAGACCCCGGTTGTCCGATTTCACCTTCAGGCACTTTCCGTGAAAACGTTCGGTTGTTTCTTCAAGAAGCTGGTGAGCCTGAAGATTACACGGTTCTGGGTAATCCTCTTTGGTCCACGTTTCTCATTCATGATAAGAGTAACCTAATGGCTCCGTTCTATACTCTTGAAGAAGAAGTTTACAACTCTTCTCATCCCTTCTGTGATCATTGTCGTTGCGTAGGTTGGAGTGGTCATTTCGTATCGAAGAGAAGGTACCATTTCATAATTCCGATGGACAATGCGTGGCATAAGCCGTTAAATGAGGAATCTCTAGATAATCAAAGTCATCTGTTACATGGTGTGATTCATTGCAATGGTTATGGTCATTTAGTATGTCTTAATGGCATTGAAGGTGGTTCCAAATATCTCAGTGGGAGAGAGGTCATGGATCTATGGGACAGAATTTGTAGCAATCTTAGAGCAAGGCAAATTGCAGTAGAAGATGCTTCAAGGAAAAGATCAATGGATCTTCGATTATTACATGGAGTTGCTTATGGTCACTCTTGGTTTGGTAGATGGGGCTATAGGTTTTGTCGTGGAAGCTTTGGCGCGACAGAACAAAACTACTATGAAGCCATTGAAACTCTTGGTTCGTTAGTTCTTGATGAGATTGCAAGAGATTTGAGTAAGACAAAGTGCCATAAAGATATCAAACAGATGATTCGTTTCTATAGAGATATGAGTGAAACACAAATCATCACAATTAGAGAGCTTCTCAGATTCATGCTCACTGTCAAGTCTCGGCGACCCGTGTCAAAGATAACAATCACCTGTTCTTCTGCTTCTAATTCTGCTGCTTCTGCTTCTGCTTCTGATTCACCTACAACATTTCTGTCAAGAAATCCAACCAAACATAATGCACTTTCATGTAGTAGATCAGATTCCATGAGTAAGGAAAAATCAGCAAGGTATAAAAAATTCAGCACAGCAGTGGTGAACATGGATAGTAGATGGCCAACAAGGAGACTAGAATTTGCAGCTCAAGTGATTGTTGATGCATTGAAAGAAGACAAAGCTACGAAATCAGGATCTAGTGGAATGACAAGACAAGATGTGAGGGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTGCTGAAATCATTGAACAATGTGATTGTTGGAAACTACGTGGTTCGCCGTATGGTTAACCCTTCTTCAAGGATCCTTGAGTATACCATTCATGAGCTTGGGAAAGGGTTCAACGCACCTGAAGTGGAACATGGAGTAATGACAGTTGCGGATAATCCTCAAGTAGATTCATCATCAACAGCAGGAGCCTCATCTTTAACTCCGGGTAATGATGTTTACAGCGATGTAGTTTACCTCTACAAGAATGTGTTGTTGGGCTATCCAGAATCAGAGGCGGTGGAATTAGCAGTTCAAACAATTCTTGACTGCAGACACTTTGTGAAAGAGTGGGAATTGAGAGATGAAATGGAACAGGTTCTGACGTTTATTTGCTGTCTGAAACCGAATTTTGTCGAGGATAAATCTGATTTAAAAGGGCCAACTTGTGGTGAGATTGTAACAGTTCCATTGCATGCAACAGTAAGGGACTTGAAACAAGCTGCTGAGGCTGCTTTAAGGGACACTTATTGCATAGCTCAGAGACTGATAGTGACAGATATAAAAGAACTGATGGGTGTGGAGGATAATGAAGTGATTTTTGGGTTGATTGAATCAGGTGTGAAGCTTTGTATTAGAGGAATCAGTATAGACTTGTGTACACCATTGAAATATCAAGGAGGGTCTGATAACTGGAAGGTGAGGTGTGAGTGTGGAGCACATGATGATGATGGTGAGAGAATGGTGTCTTGTGATATTTGTGAGGTGTGGCAGCATACAAGATGTTGTGGAATAGATGATACTGAGACTGTTCCACCATTGTTTGTGTGTACTGTATGCTGTGATTCACTTGTCCCACCAAGGATTGAATCTAGCAGCTATGTGGATTGTGCTGACGCATTTCTGGTTTTATCTGAGCCTAATCATTTGCTTGAATATGGTTACGGATACTGA 2148 0.4153 MSFSLTDGCKKRKRWPKIFRLQSFADPGCPISPSGTFRENVRLFLQEAGEPEDYTVLGNPLWSTFLIHDKSNLMAPFYTLEEEVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNAWHKPLNEESLDNQSHLLHGVIHCNGYGHLVCLNGIEGGSKYLSGREVMDLWDRICSNLRARQIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGATEQNYYEAIETLGSLVLDEIARDLSKTKCHKDIKQMIRFYRDMSETQIITIRELLRFMLTVKSRRPVSKITITCSSASNSAASASASDSPTTFLSRNPTKHNALSCSRSDSMSKEKSARYKKFSTAVVNMDSRWPTRRLEFAAQVIVDALKEDKATKSGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSSRILEYTIHELGKGFNAPEVEHGVMTVADNPQVDSSSTAGASSLTPGNDVYSDVVYLYKNVLLGYPESEAVELAVQTILDCRHFVKEWELRDEMEQVLTFICCLKPNFVEDKSDLKGPTCGEIVTVPLHATVRDLKQAAEAALRDTYCIAQRLIVTDIKELMGVEDNEVIFGLIESGVKLCIRGISIDLCTPLKYQGGSDNWKVRCECGAHDDDGERMVSCDICEVWQHTRCCGIDDTETVPPLFVCTVCCDSLVPPRIESSSYVDCADAFLVLSEPNHLLEYGYGY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01667 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 682 IPR013083 -
Vifa1g01667 715 CDD PHD_MMD1_like 634 678 - -
Vifa1g01667 715 ProSitePatterns Zinc finger PHD-type signature. 634 678 IPR019786 -
Vifa1g01667 715 SUPERFAMILY FYVE/PHD zinc finger 626 685 IPR011011 -
Vifa1g01667 715 MobiDBLite consensus disorder prediction 302 333 - -
Vifa1g01667 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 687 - -
Vifa1g01667 715 SMART PHD_3 633 679 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01667 Vifa-Chr1 273109433 273112084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01667 10 684 PHD Transcription Factor Family AT5G22260 32.591 1.19e-121 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01667 K26271 - gmx:100797388 1041.18