Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01666 ATGCCTCAACCTAAGCTTCTTATCACTCTTTTTCAATCAGTAACCATGATTCTATGTTGTGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCCTCAAACATCAACTTATATGGAAATGCAACCATTAACAGATCCATTCTCACTCTCACTAATGGAAGTTTCTTCTCAATAGGTCGTGCTTTTTACCCGAAAAAACTACCTACCAAACTTCCCAACTCTTCCATTCTTCTCCCCTTTGCTACTTCCTTCATCTTCTCTGTTGCCCCTATCAAAAACTATATTGCAGGACATGGCCTTGCCTTCATATTCACACCTTCAAGAGGTCTAAATGGCACGACATCAGCCGAGTATAATGGTCTTTTCAATCTCACCAATGAAGGTAATCCTAATAACCATGTTCTTGGAATTGAATTTGATATAGTTAAAAACGAAGAAGAATTCAACGATATAAATGACAATCATGTTGGTCTTGACATAAACTCGCTTAGATCCTTACCTTCACACGAGGCTGGATACTGGGGTGGAAAAGATGACAATGAGTTTAAGGTGTTGAAGATAAAAAGTGGAGAAAATTATCAAGTATGGATTGAATTTATGCATTCTCGGATAAATGTTACCATGGCTCGTGCAGGACAAAAGAGGCCTCGAGTTCCTCTCATCAGTGTGAATGTTAATCTTTCTGGGGTTCTTATGGACGAAACCTACGTCGGATTCTGCGCTGCCACAGGGCTATTAATCGACAGTAGTAGGATTCTTGCTTGGAGCTTTAGCAATACAAATTTTTCAATTGGTGATGCGTTAGTGACAGACAACTTGCCTTCATTTGTGCCTTATAAGGGATGGTTTTCTCGAGCAAAAGTTATAGCTGTAGGAGTCACCAGTGTTGTCTGTGTGTTGATCATCTGTTGCGGTTGTGTAGTGTTTTTCATTCTATATAGGAGGGGAAAGGAAGATGCAGGAATTGAAGAGTGGGAACTAGAATATTGGCCACATAGAATTAGTTTCCAAGAGATTCATGAAGCAACAAGAGGGTTCTCTGAAGAGAATGTGGTTGCTGTAGGAGGAAATGGAAAGGTGTATAAAGGAATTTTGCAAGGAGTTGAAGTGGCAGTCAAGAGAATCCCTCAAGAAAGAGAAGATGGAATGAGAGAGTTTTTGGCAGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAGGATTGAGAGGTTGGTGCAAAGAAGAAAAGGGAAGCTTGATTCTAGTTTATGACTTCATGAATAATGGAAGTTTAGACAAATGGATCTTTGAGTGTGAAGAAGGAAAGATGCTAACATGGGAAGAAAGGATGCAGGTTTTGAAAAATGTAGCTGCAGGGATTCTATACCTACATGAAGGTTGGGAAGTTAAGGTCTTGCATAGAGATATCAAAGCGAGCAATGTTTTACTTGACAAGGACATGAATGCAAGATTGGGAGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGACAAGTGGCCAGCACAACAAAAGTACTAGGGACATTAGGATACATTGCTCCGGAAGTGATTCGAACCGGAAGGGCGTCGACTATGTCTGATGTGTTCGGCTTTGGTATATTGTTGTTAGAAGTAATTTGCGGGCGAAGACCGATTGAAGAACTTAAGCCAGGACTAATTGAATGGGTGAGGTCTCTAATGTTGGTTAGCCAATTGCACAATGCTGTTGATGAAAGGTTGAAGGCCAGAGGAGGATACCCTATTGAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGATGTGTTCAAATTCAGACCCTAGTGTTAGACCAACAATGAGACAGATTGTGAAAAGTCTGGAGGGAGAAATGGACAACATTGATTGTGATGAAGAAAATATGGAGATTAGTTTGATTGGAAAACTAAAATCAGTTGAAATATGGTCTAAAACAATAAGTACAGTTCCATATAGAGATCACCCTACTTTTGAAGAAGTTATAAGTTATAATTCAAAAGCATCTACAAGTGGCTCAAGTGTTATTCAAGCATCAGATTCAGATATCATTTGGGAAGGCAGATAA 2073 0.3932 MPQPKLLITLFQSVTMILCCVSTTEFVYNTNFNSSNINLYGNATINRSILTLTNGSFFSIGRAFYPKKLPTKLPNSSILLPFATSFIFSVAPIKNYIAGHGLAFIFTPSRGLNGTTSAEYNGLFNLTNEGNPNNHVLGIEFDIVKNEEEFNDINDNHVGLDINSLRSLPSHEAGYWGGKDDNEFKVLKIKSGENYQVWIEFMHSRINVTMARAGQKRPRVPLISVNVNLSGVLMDETYVGFCAATGLLIDSSRILAWSFSNTNFSIGDALVTDNLPSFVPYKGWFSRAKVIAVGVTSVVCVLIICCGCVVFFILYRRGKEDAGIEEWELEYWPHRISFQEIHEATRGFSEENVVAVGGNGKVYKGILQGVEVAVKRIPQEREDGMREFLAEVSSIGRMKHRNLVGLRGWCKEEKGSLILVYDFMNNGSLDKWIFECEEGKMLTWEERMQVLKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHGQVASTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILLLEVICGRRPIEELKPGLIEWVRSLMLVSQLHNAVDERLKARGGYPIEEAERLLHLGLMCSNSDPSVRPTMRQIVKSLEGEMDNIDCDEENMEISLIGKLKSVEIWSKTISTVPYRDHPTFEEVISYNSKASTSGSSVIQASDSDIIWEGR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01666 690 Gene3D Transferase(Phosphotransferase) domain 1 424 638 - -
Vifa1g01666 690 FunFam L-type lectin-domain containing receptor kinase S.4 22 267 - -
Vifa1g01666 690 SUPERFAMILY Protein kinase-like (PK-like) 327 618 IPR011009 -
Vifa1g01666 690 PANTHER - 42 621 - -
Vifa1g01666 690 FunFam L-type lectin-domain containing receptor kinase S.4 424 630 - -
Vifa1g01666 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 262 IPR013320 -
Vifa1g01666 690 CDD lectin_legume_LecRK_Arcelin_ConA 24 262 IPR001220 GO:0030246
Vifa1g01666 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vifa1g01666 690 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 309 423 - -
Vifa1g01666 690 Pfam Protein kinase domain 352 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01666 690 SMART serkin_6 348 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01666 690 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246
Vifa1g01666 690 Gene3D - 22 267 - -
Vifa1g01666 690 Gene3D Phosphorylase Kinase; domain 1 316 423 - -
Vifa1g01666 690 CDD STKc_IRAK 357 619 - -
Vifa1g01666 690 ProSiteProfiles Protein kinase domain profile. 348 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01666 Vifa-Chr1 272548384 272550456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01666 21 565 Receptor kinase-like Gene Family AT4G04960 57.866 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g01666 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01666 - - gmx:100776006 1059.28