Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01665 ATGAAGGAAGAGGTTGAAGAAGAGAGAAACAAGAACAAGCAAACGGCGACATGTTCAAGATCTCCTTCTTTTACACGTTCATCTTTTTCATATGAAAGAGAATACGAAATTCATGAAGTTCGAGATGGATTGAAAGCATCAAGAGGAAGCAGATTCAATTTAATAGAGAAAGAATTAGGATTAAAAATTGGGTGGAGAAAGTTCAGTCGACAAGCTCTTTTTCATGAATTCGTTATTGATCCTGATAACAGCTGGTATAGAGCATGGATCAAGTTCATATTATTATGGGCAGTATACTCATCATTCTTCACCCCGATGGAGTTTGGATTTTTTCGTGGCCTGCCAGAGAATCTCTTTATACTGGACATCATAGGACAAATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTCACTTTTAGAGACAGTCAAACCTATCACATGGTCTACCGGCGTACTCCTATCGCTCTGCGGTATCTAAAATCTACTTTTGTCGTTGATCTTCTTGCATGTATGCCGTGGGACCTCATCTACAAGGCTTGTGGACACAGAGAGGAAGTGAGGTTCCTATTGTGGATCAGATTATATAGGGCGCAGAGAGTTGTGCAATTTTTCATGAATTTGGAAAAAGACATTCGTGTCAACTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAAATCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCGCAAGAGGGTTACACATGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAAGTTCAGAGAAATTGATCTTTGGAAGCGCTACACGACATCAATGTATTTTGCTATTGTTACCATGGCTACTGTCGGCTATGGGGATATACATGCTGTGAATATGAGGGAAATGATATTCATAATGGTTTATGTTTCACTCGACATGGTTCTTGGTGCTTATTTGATCGGTAATATGACAGCTTTAATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATTTGATGAAATATATGAATAGAAATAAACTTGGTAGGGATATTCGGGAACAAATAAAGGGTCATGTTCGCTTGCAGTTTGAGAGCAGCTACACCGACGCTGCTGTCCTTCAAGACATTCCCATTTCAATTCGATCTAAGATATCCCAATCGTTGTATTTGCCATACATTGAAAACATTCCTCTTTTTAAAGAATGCTCTTCAGAATTCATCAACCAGATTGTTACTAGGCTCCACGAGGAATTCTTTCTTCCAGGAGAAGTTATAATGCAACAAGGACACGCTGTTGATCAACTATATTTTGTCTGTGATGGTGTGCTGGAAGAAGTAGGCACAGCTGAAGATGGGTCTGAAGAAACTGTTGCACTTTTAGAGCGCAATAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTGTGTAGGGTCCTGCGGCTTGATAAACAATCATTTTCAAATATCTTAGATATATACTTTTATGATGGGAAAAAAGTATTAGACAATCTTGTAGAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACCTTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTGATGGTGATATGTATCAGCTAATAAGTTTGATTCGAGCTGGAGCTGATCCTAAGAAGACAGATTATGACGGAAGGTCACCTTTGCATCTCGCGGCATGCAGAGGATATGAAGATATCACACTTCTCCTTATTCATGAAGGTGTAGAGATCAACATCAAAGATAACTTCGGGAACACACCACTACTTGAAGCAGTTAAGAATGGAAACGATCGGATTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTTTGAAGATAGATAATGGTGGTAGTTTTTTATGCACAGCAGTTGCAAGAGGAGATTCAGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATTCTAATTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGGTTAATCTTCATGGCAAAGTTGCTATTAGAAGCTGGAGCCAGTGTTTTTACAAAAGACAGGTGGGGAAATACTCCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTGATAAAGATGCTGGAAGATGCAAAATCTGCTCAGTTGACAGAATACCCTTTTCCCCAAGAAATTACAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCATGGGATCCTAATGAGAGTAGAAGAAATGGTATAGTATTATGGGTTCCACACACCATTGAAGAGTTAATCAAAACAGCCGCAGAACAGATAGGATTTTCTAGTGACTCTTGTATTTTATCAGAAGATGCTGGTAAAATTATTGATGTGGGCATGATTAAGGATGATCAGAAACTGTATTTAGTTCTTGAAACACATTAG 2496 0.3882 MKEEVEEERNKNKQTATCSRSPSFTRSSFSYEREYEIHEVRDGLKASRGSRFNLIEKELGLKIGWRKFSRQALFHEFVIDPDNSWYRAWIKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVTFRDSQTYHMVYRRTPIALRYLKSTFVVDLLACMPWDLIYKACGHREEVRFLLWIRLYRAQRVVQFFMNLEKDIRVNYIIARIVKLLVVEIYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSKFREIDLWKRYTTSMYFAIVTMATVGYGDIHAVNMREMIFIMVYVSLDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLGRDIREQIKGHVRLQFESSYTDAAVLQDIPISIRSKISQSLYLPYIENIPLFKECSSEFINQIVTRLHEEFFLPGEVIMQQGHAVDQLYFVCDGVLEEVGTAEDGSEETVALLERNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILDIYFYDGKKVLDNLVEGKESIRGKQLESDITFHIGKLESELALKVNRAAFDGDMYQLISLIRAGADPKKTDYDGRSPLHLAACRGYEDITLLLIHEGVEINIKDNFGNTPLLEAVKNGNDRIASLLVREGASLKIDNGGSFLCTAVARGDSDYLKRLLSNGMDSNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKMLEDAKSAQLTEYPFPQEITDKVHPKKCTVFPFHPWDPNESRRNGIVLWVPHTIEELIKTAAEQIGFSSDSCILSEDAGKIIDVGMIKDDQKLYLVLETH 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01665 831 ProSiteProfiles cAMP/cGMP binding motif profile. 407 510 IPR000595 -
Vifa1g01665 831 SUPERFAMILY Voltage-gated potassium channels 80 332 - -
Vifa1g01665 831 SMART ANK_2a 713 743 IPR002110 GO:0005515
Vifa1g01665 831 SMART ANK_2a 647 676 IPR002110 GO:0005515
Vifa1g01665 831 SMART ANK_2a 583 612 IPR002110 GO:0005515
Vifa1g01665 831 SMART ANK_2a 680 709 IPR002110 GO:0005515
Vifa1g01665 831 SMART ANK_2a 616 645 IPR002110 GO:0005515
Vifa1g01665 831 PRINTS Ankyrin repeat signature 584 599 IPR002110 GO:0005515
Vifa1g01665 831 PRINTS Ankyrin repeat signature 696 710 IPR002110 GO:0005515
Vifa1g01665 831 PRINTS EAG/ELK/ERG potassium channel family signature 133 142 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01665 831 PRINTS EAG/ELK/ERG potassium channel family signature 323 332 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01665 831 PRINTS EAG/ELK/ERG potassium channel family signature 231 241 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01665 831 PRINTS EAG/ELK/ERG potassium channel family signature 122 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01665 831 PRINTS EAG/ELK/ERG potassium channel family signature 279 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01665 831 Pfam Ankyrin repeats (3 copies) 653 734 IPR002110 GO:0005515
Vifa1g01665 831 Pfam Ankyrin repeats (3 copies) 558 645 IPR002110 GO:0005515
Vifa1g01665 831 Pfam Cyclic nucleotide-binding domain 427 511 IPR000595 -
Vifa1g01665 831 SUPERFAMILY cAMP-binding domain-like 335 524 IPR018490 -
Vifa1g01665 831 SUPERFAMILY Ankyrin repeat 557 735 IPR036770 -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat region circular profile. 616 647 - -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat region circular profile. 647 678 - -
Vifa1g01665 831 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g01665 831 Gene3D - 548 646 IPR036770 -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat region circular profile. 583 615 - -
Vifa1g01665 831 FunFam Potassium channel SKOR 87 332 - -
Vifa1g01665 831 CDD CAP_ED 407 513 IPR000595 -
Vifa1g01665 831 Gene3D Helix hairpin bin 334 390 - -
Vifa1g01665 831 SMART cnmp_10 407 525 IPR000595 -
Vifa1g01665 831 Gene3D Jelly Rolls 391 528 IPR014710 -
Vifa1g01665 831 Pfam KHA, dimerisation domain of potassium ion channel 757 826 IPR021789 -
Vifa1g01665 831 PANTHER POTASSIUM CHANNEL AKT1 59 827 IPR045319 GO:0005249|GO:0006813
Vifa1g01665 831 Gene3D - 647 743 IPR036770 -
Vifa1g01665 831 ProSiteProfiles KHA domain profile. 758 831 IPR021789 -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Vifa1g01665 831 FunFam Potassium channel KAT2 395 532 - -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat profile. 616 648 IPR002110 GO:0005515
Vifa1g01665 831 Pfam Ion transport protein 87 332 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat region circular profile. 680 712 - -
Vifa1g01665 831 Gene3D - 89 333 - -
Vifa1g01665 831 ProSiteProfiles Ankyrin repeat profile. 647 679 IPR002110 GO:0005515
Vifa1g01665 831 FunFam Gated outwardly-rectifying K+ channel 622 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01665 Vifa-Chr1 272326338 272344324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01665 626 733 Ion Channels AT5G37500 29.927 1.95e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01665 K21867 - gmx:100814385 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01665 1 272326338 272344324 Vifa1g01665 1 272326338 272344324 ECH