Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01664 ATGGATCCGTTTCAACAAGCAGGTCAACCTTCTTCATCAACAAAAGTAGAAAGAAAGATTATTGAAAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTACAATCCCAAGGAAGCTTTACCACTACCTGATCAAATAGACGATGCTATAAACTACATAAATAGTTTAAAGACAGATTTGAAATTGGCGAAGGAGAAAAAAGAAAGTTTAATGAGAAGGAAGAGATCACGTAGTGGCTGTTCGAGTTCTTCTGGAGCAAAAGGAAGCATAAAATCACCAAATATTGAGATCCATGAAAATGGTTCTTCTCTACAAGTCATTGTAACATGTGGGGTCGATGATAAGTTCATTTTCTATGAAATTCTAAGAATACTGCATGAAGATCACGTTGAGGTCATCTCTGCAAATTCTTCATTGGTAGGAGATTCGGTTATTCATGTTGTGCATGCAGAGAATCTGCAATCATTGTTTCAATTTGGAGCCACTAATGTAGGTGAGAGATTGAAAAGGTTTGTGAAAGGATCTGTGAGAGAGATGCAAATAATAGAGCCTCAATTGTGGGATTTTGAGATTGGAAATGAGACTTGGGATCTAAATGCTGTAGTAAACAAGTGTTTACCAAATTTGCAATGA 660 0.3606 MDPFQQAGQPSSSTKVERKIIEKNRRNKMKSLYSKLNSLLPNYNPKEALPLPDQIDDAINYINSLKTDLKLAKEKKESLMRRKRSRSGCSSSSGAKGSIKSPNIEIHENGSSLQVIVTCGVDDKFIFYEILRILHEDHVEVISANSSLVGDSVIHVVHAENLQSLFQFGATNVGERLKRFVKGSVREMQIIEPQLWDFEIGNETWDLNAVVNKCLPNLQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01664 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 - -
Vifa1g01664 219 SMART finulus 19 71 IPR011598 GO:0046983
Vifa1g01664 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 84 IPR036638 GO:0046983
Vifa1g01664 219 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g01664 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Vifa1g01664 219 Gene3D - 7 90 IPR036638 GO:0046983
Vifa1g01664 219 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Vifa1g01664 219 MobiDBLite consensus disorder prediction 76 103 - -
Vifa1g01664 219 Coils Coil 55 82 - -
Vifa1g01664 219 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g01664 219 MobiDBLite consensus disorder prediction 85 103 - -
Vifa1g01664 219 FunFam Transcription factor bHLH162 6 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01664 Vifa-Chr1 272185163 272186113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01664 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.220 6.15e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01664 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01664 - - mtr:25487667 263.462