Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01657 ATGGATCCGAATCAACATGCCGGTCAACCTTGTTCTTCAACAAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAAGCCTTACCACTAATTGATCAAGTTGACGATGCTATAAACTACATAAATAGCTTAAAGACAAATTTGAAATTGGCGAACGAGAAGAAAGAAAGTTTATTGAGAAACAAGAGATCACGTAGTGGCTGTTCGAGCTCTTCTGGAGCAAAAGGAAGCATAAAATCACCAAATATTGAGATCCATGAAAATGGTTCTTCGTTACAAGTCATTGTAACATGTGGGGTTGATGATAAGTTCATTTTCTATGAAATTCTAAGAATACTGCATGAAGATCACGTTGAGGTCATCTCTGCAAATTCTTCATTGATAGGAGATTCGGTTATTCATGTTGTGCATGCAGAGATTCTGCAATCGTTGGTTCAATTTGGAGCGACCAATGCAGGCGAGAGATTGAAAAAGTTTGTGAACGAATCTGTGAGAGAGATGCAAATAGAGCCTCAATTGTGGGATTTTGAGACTGGAACTGAGACTTGGGATCTAAATGCAATAGTAAACAAGTGTTTACCAAATTTTTAA 654 0.37 MDPNQHAGQPCSSTKVERKIVEKNRRNKMKSLYSKLNSLLPNYNPKEALPLIDQVDDAINYINSLKTNLKLANEKKESLLRNKRSRSGCSSSSGAKGSIKSPNIEIHENGSSLQVIVTCGVDDKFIFYEILRILHEDHVEVISANSSLIGDSVIHVVHAEILQSLVQFGATNAGERLKKFVNESVREMQIEPQLWDFETGTETWDLNAIVNKCLPNF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01657 217 MobiDBLite consensus disorder prediction 80 103 - -
Vifa1g01657 217 FunFam Transcription factor bHLH162 6 91 - -
Vifa1g01657 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 83 IPR036638 GO:0046983
Vifa1g01657 217 SMART finulus 19 71 IPR011598 GO:0046983
Vifa1g01657 217 Gene3D - 10 91 IPR036638 GO:0046983
Vifa1g01657 217 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 180 - -
Vifa1g01657 217 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Vifa1g01657 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Vifa1g01657 217 MobiDBLite consensus disorder prediction 84 103 - -
Vifa1g01657 217 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01657 Vifa-Chr1 270819015 270820867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01657 1 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.583 2.01e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01657 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01657 - - mtr:25487667 260.381