Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01653 ATGGCTAAAATGAGTTCTGGTTTTATCTTGTTCATGTCGATGATGTTTCTCATCTCTTCATTGTCGTGTGGTTACAAGTTTAAGGTTGGTGGAAAAGATGGATGGGCTGTGAAGCCCTCTGCAGGTTATGCTCAGTGGGCTCATTCACTAAGGTTTCAAATCAACGACTCACTTTATTTTAAGTATGATAAAGCATATGATTCAGTGTTGGTGGTAAATGAAAAAGAGTATTATTCATGTAACACAAAGAATCCGATCAAGAAGTTTGAAGGGGGAGAATCGACCGTTAATTTGGATAGATCTGGTTCCTTTTACTTCATCAGTGGAAATGTTGAGAGTTGTGGAAAGGGTGAAAAGTTGGCTGTTCTTGTTTTGTCTCCTAGACATGGCCACAAGAATCATGGTCCGGCAAAATCACCATGGATTGCACCGGTTCAATCGCCTGCACCATCATTGAAGGCTCCCGCACCAAGTTGGACTGCTCCTGCGCCAGCTTATAAGGCTCCATCTCCAAGTGCACCAGGTTCGACTGCTCCCGCACCAGCATGGAAGGCTCCTGCACCAGGTTGGACTGCTCCTGCACCACATTCGAAGGCTCTCTCACCAGGTTCAAAGGCTCATGCTCCCGTGCCAGGTTGGAAGGTTCCTGCACCTGAATCTCCTGCACCAGGATGGAAGGCTCCAACGCCTTCATGGACCGCTCCTTCACCCGGATCGACCGCTTCTGCACCAAATGCCCCTTCACCCGGTTCGACCGCTCCTGCACCAAATGCCCCTTCACCCGGTTCGACCGCTACCACACCAAGTGCCCCTTCACCCGGTTCGACCGCTACCACACCAAGTGCCCCTGAATGGAATGCTTCGGCACCAAGCCAATGGAATGCTCCTGCACCATCTCCTCGCTCTAGTGGTTCTTCAAAGTTGAGTGTTTCTCATTGTGTCATTGTTGCCGTGGCTTTGGTCTTAGCCAGCGTTGGTTTTTAG 984 0.4959 MAKMSSGFILFMSMMFLISSLSCGYKFKVGGKDGWAVKPSAGYAQWAHSLRFQINDSLYFKYDKAYDSVLVVNEKEYYSCNTKNPIKKFEGGESTVNLDRSGSFYFISGNVESCGKGEKLAVLVLSPRHGHKNHGPAKSPWIAPVQSPAPSLKAPAPSWTAPAPAYKAPSPSAPGSTAPAPAWKAPAPGWTAPAPHSKALSPGSKAHAPVPGWKVPAPESPAPGWKAPTPSWTAPSPGSTASAPNAPSPGSTAPAPNAPSPGSTATTPSAPSPGSTATTPSAPEWNASAPSQWNAPAPSPRSSGSSKLSVSHCVIVAVALVLASVGF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01653 327 Pfam Plastocyanin-like domain 35 117 IPR003245 GO:0009055
Vifa1g01653 327 FunFam Early nodulin-like protein 1 24 129 - -
Vifa1g01653 327 CDD OsENODL1_like 25 125 IPR041846 -
Vifa1g01653 327 Gene3D - 24 128 IPR008972 -
Vifa1g01653 327 MobiDBLite consensus disorder prediction 214 230 - -
Vifa1g01653 327 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Vifa1g01653 327 MobiDBLite consensus disorder prediction 129 308 - -
Vifa1g01653 327 MobiDBLite consensus disorder prediction 257 308 - -
Vifa1g01653 327 MobiDBLite consensus disorder prediction 232 248 - -
Vifa1g01653 327 PANTHER BLUE COPPER PROTEIN 25 192 IPR039391 GO:0009055
Vifa1g01653 327 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Vifa1g01653 327 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 227 244 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 205 221 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 136 152 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 247 272 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 162 174 - -
Vifa1g01653 327 PRINTS Proline rich extensin signature 181 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01653 Vifa-Chr1 270199801 270200933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01653 8 151 Phytocyanin Superfamily AT4G28365 48.980 4.64e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01653 - - psat:127086906 369.392