Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01650 ATGCCAGCCCAGAAGCGTGCCTTACCTGAGTCAATGGAGGATGAAGAAACTTCACAGCATCTTCACTATTCTCGCCATGTCAAGCATCAACCGAACAACCGCGACCCAAACTTCATCGACCAACAGCATCAACTCGAACAAGAGGAAGATGAAGAAGACGATGATGATCAGCAAGAGCAAGAGGAGGAGGAGGAGGAGCAAGGGGAGGAAGATGAAGATGAAGAAGAGGCTGAAGAGGATGATGATGATGAAGATGAAGATGAAGGGCAGCACCATAACGACGATAAGGAAAAATCACAGGATTCCGACGAATCCCCTTCTTCTGACTCTGAAGAAAAACCTGAATATGTGTATGTAGAACTTCCGGATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCTTTGCGAGATGATCCAAACTATGATGCCCTTATTGCTACTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAGTTTCGTGAAGAAGAAAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCGAAAGTATTTCAGCGGCAATCTGAAGCACTAACCAAAAGGCGGAAAGATAATACACCAAGTTCATTTGTGACAAGATCACAGCGGAATCAAAGAAACCTTCAATCCAGGAGACAAAATCAAGTTGCTGATATTCAAGGATCTGAAGAAAACGAGGAGGAAAATGGAAACAATGAAAAGGACTCGTCTTCTGGTGACGAGCGGGGTACAGAACTCCGACAGAGAAAACGAAAGAGATGGACCAGAGTTCGCTCCTCTCAGCCCTCGTCATCAATGGCAAGTCCTGATGGTGGAAGTGTGGAAAGTGATATGGATATAACTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCGAAACCTAGGAAGCTTACTTGGGGAAGAGGTGGTTTTAGAAGTAACACAAGACATGGCAGTGGTGGTGGTAGCAATAGCAAAAATTCTCGCAGTGGCCGAATGTCTAGATTGGTTGATTATCTGAAAAGCTTGAATGAAAACACCGATGAGTTTGATGTTCATCTCATGTTTGTTTCTCCGGACAAAGAAGCTCCTACACCGAGTTTGGAGCAGCTTCACCTGTGTTGTCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAGACACCTTTGACAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTATAAACCGTGACAAGTCAGCTGACGAGAAATCAGTCGCGGAATGTGATGAGCTAACATCACTGGTTATAGATCCACAAAAAGATGAATTGGAACTTCTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAATCTATATCTAAAAAGGGGCATTTGATTCTGGCATATAAGAGGAAAGTGTAG 1533 0.4357 MPAQKRALPESMEDEETSQHLHYSRHVKHQPNNRDPNFIDQQHQLEQEEDEEDDDDQQEQEEEEEEQGEEDEDEEEAEEDDDDEDEDEGQHHNDDKEKSQDSDESPSSDSEEKPEYVYVELPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALTKRRKDNTPSSFVTRSQRNQRNLQSRRQNQVADIQGSEENEEENGNNEKDSSSGDERGTELRQRKRKRWTRVRSSQPSSSMASPDGGSVESDMDITRENRGISRQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKNSRSGRMSRLVDYLKSLNENTDEFDVHLMFVSPDKEAPTPSLEQLHLCCRPTLSVKNLYEYVASQTPLTVEEVEILAVKGCSSINRDKSADEKSVAECDELTSLVIDPQKDELELLQAHETVAEIRSKSISKKGHLILAYKRKV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01650 510 MobiDBLite consensus disorder prediction 323 337 - -
Vifa1g01650 510 Pfam Zinc finger, C3HC4 type (RING finger) 129 169 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 91 115 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 8 33 - -
Vifa1g01650 510 ProSiteProfiles Zinc finger RING-type profile. 130 170 IPR001841 -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 45 90 - -
Vifa1g01650 510 Coils Coil 196 219 - -
Vifa1g01650 510 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Vifa1g01650 510 PANTHER OS11G0578200 PROTEIN 43 509 IPR044592 -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 356 372 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 278 295 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 1 115 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 228 372 - -
Vifa1g01650 510 Coils Coil 45 81 - -
Vifa1g01650 510 MobiDBLite consensus disorder prediction 242 267 - -
Vifa1g01650 510 CDD RING-HC_RING1-like 127 192 - -
Vifa1g01650 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 200 IPR013083 -
Vifa1g01650 510 SUPERFAMILY RING/U-box 117 184 - -
Vifa1g01650 510 SMART ring_2 130 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01650 Vifa-Chr1 269811781 269815875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01650 128 299 C3H Transcription Factor Family AT2G30580 26.882 1.20e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01650 K10695 - gmx:100776547 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01650 1 269811781 269815875 Vifa1g01650 1 269811781 269815875 ECH