Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01645 | ATGAGTACGATTTGTGATGAACAACAAAACCACAAGTTTCATTCTTCTTACCAACCTCTCTCTCCCAAAAAACCTCTTAGAGAAATCGATATCCCTCCAAGAAAACTCCTCACCCGTCGCACGACTGCCGCCGACATCTTCTCCGATGACACCATCCTTCAAAAATATCTCCCTCACAATGACTCCGACTCAGATTCCGATGATCCTTACTCTTCCGACCATTTTCGTATGTATGAATTCAAAGTCCGGAGATGCACTCGCAGCCGAAGCCACGACTGGACTGACTGTCCATTTGCACACCCTGGAGAGAAAGCACGCCGTCGCGATCCACGGCGGTTTCATTACTCGGGGACTGTCTGTCCTGATTATCGCCGTGGTGGCTGTAACCGCGGTGATTCTTGTGAGTTTGCTCACGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACAGAAGCTTGCAAAGATGGGAAAAACTGTAAGAGAAAAGTTTGTTTTTTCGCACACACTCCTCGTCAGTTAAGAATCCTTCCGGTAACTTCTTCTTCTTCGAATTCAAATGAACAATTCTCATGCAACAAGAAAAATAACAAGCTTTTAAATAACCATGTTTCATCAAAATCAAACCATGGTTGTTTGTTTTGTCGCTGTGGAGGTAATGCTAATGCTAATAATTCTCCAACTTCAACTCTTTTTGGTATGTCTCATTTCTCGCCGCCGGCGTCTCCTCCTGTATCTCCGATGAAGCCGCGAAATGGCGTTTCATCTCTCTCACGCTATGGTTCATTGGTTGATAGTAATAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGCTCTTTTGAAGGATTGAATTTCAATGACGGTTCATCTTCTTCTTCCGTTGTTTCTGGTTTACAGAACCAGAACAACACAGGTTATTTTAATGTTCCTGTTAACTCCGAGGAACAGATTCAGAAACCGCATTTCAATATTCTTTCACCTTCGATTCAACAGAGTTTGACACCGGTTAGTTTCAATGAAGGTGACAATAACATAAACAACAACATGATGTTTTTGGGAGATAACGAGAATAATAAGGTTCTTGTCGGGGGTGATGTTCCTGATCTGGGTTGGGTTAATGACCTTCTGATGTAG | 1143 | 0.4269 | MSTICDEQQNHKFHSSYQPLSPKKPLREIDIPPRKLLTRRTTAADIFSDDTILQKYLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPDYRRGGCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSNSNEQFSCNKKNNKLLNNHVSSKSNHGCLFCRCGGNANANNSPTSTLFGMSHFSPPASPPVSPMKPRNGVSSLSRYGSLVDSNNLRYRDMLIDLLGSFEGLNFNDGSSSSSVVSGLQNQNNTGYFNVPVNSEEQIQKPHFNILSPSIQQSLTPVSFNEGDNNINNNMMFLGDNENNKVLVGGDVPDLGWVNDLLM | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01645 | 380 | ProSiteProfiles | Zinc finger C3H1-type profile. | 115 | 141 | IPR000571 | GO:0046872 | |
Vifa1g01645 | 380 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vifa1g01645 | 380 | Gene3D | - | 114 | 177 | - | - | |
Vifa1g01645 | 380 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vifa1g01645 | 380 | SMART | c3hfinal6 | 114 | 140 | IPR000571 | GO:0046872 | |
Vifa1g01645 | 380 | SMART | c3hfinal6 | 149 | 172 | IPR000571 | GO:0046872 | |
Vifa1g01645 | 380 | PANTHER | UNKEMPT FAMILY MEMBER | 49 | 379 | IPR045234 | - | |
Vifa1g01645 | 380 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 119 | 139 | IPR000571 | GO:0046872 | |
Vifa1g01645 | 380 | SUPERFAMILY | CCCH zinc finger | 113 | 143 | IPR036855 | GO:0046872 | |
Vifa1g01645 | 380 | FunFam | Zinc finger CCCH domain-containing protein 66 | 72 | 140 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01645 | Vifa-Chr1 | 269692671 | 269693813 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01645 | 67 | 176 | C2H2 Transcription Factor Family | AT5G07500 | 69.091 | 1.10e-53 | 176 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa1g01645 | zf-CCCH | 7.9e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01645 | K23047 | - | gmx:100801371 | 429.869 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g01645 | 1 | 269692671 | 269693813 | Vifa1g01645 | 1 | 269692671 | 269693813 | ECH |