Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01645 ATGAGTACGATTTGTGATGAACAACAAAACCACAAGTTTCATTCTTCTTACCAACCTCTCTCTCCCAAAAAACCTCTTAGAGAAATCGATATCCCTCCAAGAAAACTCCTCACCCGTCGCACGACTGCCGCCGACATCTTCTCCGATGACACCATCCTTCAAAAATATCTCCCTCACAATGACTCCGACTCAGATTCCGATGATCCTTACTCTTCCGACCATTTTCGTATGTATGAATTCAAAGTCCGGAGATGCACTCGCAGCCGAAGCCACGACTGGACTGACTGTCCATTTGCACACCCTGGAGAGAAAGCACGCCGTCGCGATCCACGGCGGTTTCATTACTCGGGGACTGTCTGTCCTGATTATCGCCGTGGTGGCTGTAACCGCGGTGATTCTTGTGAGTTTGCTCACGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACAGAAGCTTGCAAAGATGGGAAAAACTGTAAGAGAAAAGTTTGTTTTTTCGCACACACTCCTCGTCAGTTAAGAATCCTTCCGGTAACTTCTTCTTCTTCGAATTCAAATGAACAATTCTCATGCAACAAGAAAAATAACAAGCTTTTAAATAACCATGTTTCATCAAAATCAAACCATGGTTGTTTGTTTTGTCGCTGTGGAGGTAATGCTAATGCTAATAATTCTCCAACTTCAACTCTTTTTGGTATGTCTCATTTCTCGCCGCCGGCGTCTCCTCCTGTATCTCCGATGAAGCCGCGAAATGGCGTTTCATCTCTCTCACGCTATGGTTCATTGGTTGATAGTAATAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGCTCTTTTGAAGGATTGAATTTCAATGACGGTTCATCTTCTTCTTCCGTTGTTTCTGGTTTACAGAACCAGAACAACACAGGTTATTTTAATGTTCCTGTTAACTCCGAGGAACAGATTCAGAAACCGCATTTCAATATTCTTTCACCTTCGATTCAACAGAGTTTGACACCGGTTAGTTTCAATGAAGGTGACAATAACATAAACAACAACATGATGTTTTTGGGAGATAACGAGAATAATAAGGTTCTTGTCGGGGGTGATGTTCCTGATCTGGGTTGGGTTAATGACCTTCTGATGTAG 1143 0.4269 MSTICDEQQNHKFHSSYQPLSPKKPLREIDIPPRKLLTRRTTAADIFSDDTILQKYLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPDYRRGGCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSNSNEQFSCNKKNNKLLNNHVSSKSNHGCLFCRCGGNANANNSPTSTLFGMSHFSPPASPPVSPMKPRNGVSSLSRYGSLVDSNNLRYRDMLIDLLGSFEGLNFNDGSSSSSVVSGLQNQNNTGYFNVPVNSEEQIQKPHFNILSPSIQQSLTPVSFNEGDNNINNNMMFLGDNENNKVLVGGDVPDLGWVNDLLM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01645 380 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Vifa1g01645 380 MobiDBLite consensus disorder prediction 1 17 - -
Vifa1g01645 380 Gene3D - 114 177 - -
Vifa1g01645 380 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g01645 380 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Vifa1g01645 380 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Vifa1g01645 380 PANTHER UNKEMPT FAMILY MEMBER 49 379 IPR045234 -
Vifa1g01645 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Vifa1g01645 380 SUPERFAMILY CCCH zinc finger 113 143 IPR036855 GO:0046872
Vifa1g01645 380 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01645 Vifa-Chr1 269692671 269693813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01645 67 176 C2H2 Transcription Factor Family AT5G07500 69.091 1.10e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g01645 zf-CCCH 7.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01645 K23047 - gmx:100801371 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01645 1 269692671 269693813 Vifa1g01645 1 269692671 269693813 ECH