Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01638 ATGGAAGAAACTGCAGTATCATTTGTTTTACAAGAACTAGGCCAATTTGTAATAAAAGAAACTAGCCAATATACAGTAGAAGAAAGAAATTCAGTAGCAGGGATTGAAAGAGACTTCAATGATATCAAAGATGAACTTGAGAGCATCCAAGCCTTCCTCAAGGATGCAGACACAAAGGCTGCTGCTGATGATGATGGATCCAATGGAGTCAAAACTTGGGTGAAGCAGGTGAGAGAAGCGTCTTTTCGCATAGAAGATGTGATTGATTACTACAACATGTTTTTGGCAGAGAGGGCCAGTCATTCTATATTCAGATCTGCACTCCAAATGATTCCTGGTTTGATCAAAACCATGAATCCGCATCACCAGATTGCTTCTGAGATTCAAGACATCAAGTTATCACTTGGTAGAATCAAAGAAAGAAGTACAAGGTTCGAGTTTCTGTATGAAAATGAAGCAGGAAGGACTAAAGCTCCTAGAATTGGTGACCCTCGAATGGCTCCGTATTTCATTGAAGAGACTCAAGTTGTAGGATTTGAGTCCGCGCGAGATGAATTGGTCAGATGCTTGGTGGAGGAAAACAATGAGCTCATGTTGGTTGCTGTGGTTGGCATGGGAGGACTCGGGAAAACTACTCTCGCAAAGCATGTTTTTGATAGCCATCTAGTGAAAAAGAACTTTGATTGTAGATCTTTCATCACTGTTTCGCAATCGTACACCATCAGAGAGCTGTTGACAGAAATGATAAAGAAATTTTGCAAGGACAACAACGAGCCTATTCCAAGGGGTCTGCAGAATATGGATGATGAAACATTGATTAATCAAGTGAGACAATACCTTGAGTCAAAAAGGTACTTGGTTTTATTTGATAATGTCTGGAAAGATAATTTTTCTGATGGGATTGAACATGCCTTAATTAGTAATAACAAAGGAAGTAGAATCACTGTGACTACTAGAAAAATGCATGTAGCTGATTATTTTAGGAAATCTTTTCCTGTTCATGTCCATGAGCTACAACGTTTTCCTCCAGACAAAGCATGGGAGCTGTTTTGCAACAAGACGTTTAGAGGGCACTGTCCAACAGAACTTGAGGAGATGTCCAGAGAAATTGTTCAAAAATGTGGAGGGCTACCATTAGCTATTGTGGCCATCGGTGGTCTTTTGTTAACAAAAGCTAAAACCCTCATTACAGCTACTCAAAATCACGAATATCCGTCAACACAAAGACATCATAACGCTCACAAACAATACAGAGAATCAACGGATAGCAGAAACTGA 1278 0.3975 MEETAVSFVLQELGQFVIKETSQYTVEERNSVAGIERDFNDIKDELESIQAFLKDADTKAAADDDGSNGVKTWVKQVREASFRIEDVIDYYNMFLAERASHSIFRSALQMIPGLIKTMNPHHQIASEIQDIKLSLGRIKERSTRFEFLYENEAGRTKAPRIGDPRMAPYFIEETQVVGFESARDELVRCLVEENNELMLVAVVGMGGLGKTTLAKHVFDSHLVKKNFDCRSFITVSQSYTIRELLTEMIKKFCKDNNEPIPRGLQNMDDETLINQVRQYLESKRYLVLFDNVWKDNFSDGIEHALISNNKGSRITVTTRKMHVADYFRKSFPVHVHELQRFPPDKAWELFCNKTFRGHCPTELEEMSREIVQKCGGLPLAIVAIGGLLLTKAKTLITATQNHEYPSTQRHHNAHKQYRESTDSRN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01638 425 Gene3D - 4 125 - -
Vifa1g01638 425 PANTHER DISEASE RESISTANCE PROTEIN RP 40 392 IPR044974 GO:0006952
Vifa1g01638 425 Gene3D - 167 332 IPR027417 -
Vifa1g01638 425 Gene3D - 342 423 IPR042197 -
Vifa1g01638 425 Pfam NB-ARC domain 183 396 IPR002182 GO:0043531
Vifa1g01638 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 394 IPR027417 -
Vifa1g01638 425 MobiDBLite consensus disorder prediction 407 425 - -
Vifa1g01638 425 MobiDBLite consensus disorder prediction 401 425 - -
Vifa1g01638 425 FunFam Probable disease resistance protein At1g61300 163 330 - -
Vifa1g01638 425 CDD RX-CC_like 3 140 IPR038005 -
Vifa1g01638 425 PRINTS Disease resistance protein signature 199 214 - -
Vifa1g01638 425 PRINTS Disease resistance protein signature 374 388 - -
Vifa1g01638 425 PRINTS Disease resistance protein signature 279 293 - -
Vifa1g01638 425 Pfam Rx N-terminal domain 5 98 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01638 Vifa-Chr1 268981204 268982481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01638 177 393 WRKY Transcription Factor Family AT5G45050 26.906 3.63e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01638 K13457 - vun:114181831 439.884