Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01637 ATGAAGTCTTCGAAGCTGAAAAAAACTATTCTCGTTTTTTTCGCGGCGTGTTTATTAATCGCCATTGTTTCCGGCGCCGATCTAGCTTCCGACAGAGAAACTCTACTGATTTTAAGAAACACGGTTGGAGGACGAACCCGATCATGGAACGCGTCGGAGATGAATCCGTGTTTATGGTTCGGCGTTTCCTGCAAAAACGAAAGAGTCACGGAGTTGAGATTACCGGGGATGGGTCTCGCCGGTGATCTTCCGGTTGGTTTAGGAAACCTCACTGAATTGATGACACTTTCTCTCCGGTTCAACTTGTTAACTGGAACAATTCCTTGGGATTTTTCGAAACTTGTCTCTCTCCGAAGCCTTTACCTTCAGAATAATTTTCTCTCCGGCGAGGTTCCTGAATTTGTGTTTGGGTTGCAGAATTTGACACGGTTGAGTTTAGCTCATAATAATTTCAGCGGTGGAATTTCTTTTGGTTTCAATAATCTCACTCGTTTGGATACACTGTCTTTGGAGCAAAACCGGTTCACCGGTTCGGTCCCGGACCTTAATGTTCCTCCTTTACATGTATTCAACGTGTCGTTTAACAATTTAACCGGGCCGATTCCGTCGAGGTTTTCGCGTTTAGATATAAGCGCTTTTTCTGGCAATGAGCTTTGTGGGAGTCCCCTTCAAATACCTTGTCCTGGAAACAATGACAGAAATAAGAAAAATGGGTTATCTGGTGGAGCTATTGCTGGGATTGTAATTGGGTGTGTTTTTGGTTTTGTGTTGATTCTGGTTCTTTTGGTGTTTTTATGTAGAAAAAGAACAAAAAGTGATTCTGATAATGTAGCACATGCCAAGAGTGTTGATGTTGAAAATAGTGCTGGTGATGGTGGCGTGAGTAATTCAGGTTCTGGTTTGGTTTCTGGTTCGGCTTCGGTTTCAGCTTCGGGTGTGTCATTACAAAAGAGTTTGGTGTTTGTTGGGAATGTGACTAGAAAGTTTAGTTTAGATGATTTGTTAAGAGCTTCTGCTGAAGTTTTGGGAAAAGGGACATTTGGAACAGCTTATAAGGCAGCATTGGAGATGGGAGTGACTGTGGCTGTGAAAAGGTTGAAGGATGTTACTGCAAGTGAAAGGGAATTCAAGGAGAAAATGGAGGAGGTGGGAAAATTGGTTCATGAGAAACTGGTCCCACTTAGGGGTTATTATTATAGTAGAGATGAAAAGCTTATTGTGTATGATTACATGCCAATGGGAAGCTTATCTGCACTCTTGCATGCAAATAATGGAACTGGAAGGACTCCACTAAATTGGGAAACAAGGTCAACCATAGCCCTTGGTGCTGCCCAAGGGATTGCATACATACACTCACAAAGTCCAACATCTTCTCATGGAAACATCAAGTCATCAAACATCCTTCTCACCAAATCTTACGAATCCCGTGTCTCCGACTTCGGCCTCGCGTATCTCGCTCTTCCAACCGCTACACCCAACCGAGTTTCTGGTTACCGTGCACCAGAGGTCACTGACACCCGCAAAGTATCCCAAAAAGCAGACGTCTACAGCTTCGGTATTATGCTTCTTGAGCTTCTCACAGGAAAAGCTCCTACTCATTCTTTGCTGAATGATGAAGGAGTAGACCTACCGAGATGGGTCCAATCGATCATTCAAGACGAATGGAACACTGATGTTTTCGACATGGAGCTTCTTAGATACCAAAACGTTGAGGACGAAATGGTGAAGCTTTTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCTGATAAGAGACCTTCCATGGATGTGGTTGTAAGGTTGATTGAGGAAATTTGTCCTCCTAGTATAGTGAAAGAGCACGAAGAGATTATTGAGGATTCATGA 1866 0.433 MKSSKLKKTILVFFAACLLIAIVSGADLASDRETLLILRNTVGGRTRSWNASEMNPCLWFGVSCKNERVTELRLPGMGLAGDLPVGLGNLTELMTLSLRFNLLTGTIPWDFSKLVSLRSLYLQNNFLSGEVPEFVFGLQNLTRLSLAHNNFSGGISFGFNNLTRLDTLSLEQNRFTGSVPDLNVPPLHVFNVSFNNLTGPIPSRFSRLDISAFSGNELCGSPLQIPCPGNNDRNKKNGLSGGAIAGIVIGCVFGFVLILVLLVFLCRKRTKSDSDNVAHAKSVDVENSAGDGGVSNSGSGLVSGSASVSASGVSLQKSLVFVGNVTRKFSLDDLLRASAEVLGKGTFGTAYKAALEMGVTVAVKRLKDVTASEREFKEKMEEVGKLVHEKLVPLRGYYYSRDEKLIVYDYMPMGSLSALLHANNGTGRTPLNWETRSTIALGAAQGIAYIHSQSPTSSHGNIKSSNILLTKSYESRVSDFGLAYLALPTATPNRVSGYRAPEVTDTRKVSQKADVYSFGIMLLELLTGKAPTHSLLNDEGVDLPRWVQSIIQDEWNTDVFDMELLRYQNVEDEMVKLLQLALECTAQYPDKRPSMDVVVRLIEEICPPSIVKEHEEIIEDS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01637 621 SUPERFAMILY L domain-like 44 208 - -
Vifa1g01637 621 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Vifa1g01637 621 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Vifa1g01637 621 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vifa1g01637 621 Gene3D Transferase(Phosphotransferase) domain 1 411 617 - -
Vifa1g01637 621 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Vifa1g01637 621 CDD STKc_IRAK 342 605 - -
Vifa1g01637 621 FunFam pollen receptor-like kinase 1 305 410 - -
Vifa1g01637 621 PANTHER OS05G0588300 PROTEIN 12 607 - -
Vifa1g01637 621 SUPERFAMILY Protein kinase-like (PK-like) 340 602 IPR011009 -
Vifa1g01637 621 FunFam Probable inactive receptor kinase RLK902 28 183 - -
Vifa1g01637 621 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Vifa1g01637 621 FunFam Probable inactive receptor kinase At1g48480 411 612 - -
Vifa1g01637 621 ProSiteProfiles Protein kinase domain profile. 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01637 621 Pfam Protein kinase domain 339 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01637 Vifa-Chr1 268514839 268517817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01637 27 609 Receptor kinase-like Gene Family AT1G48480 55.429 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g01637 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01637 - - gmx:100801582 809.29