Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01632 ATGGGAAGGCAACCTTGTTGTGAGAAAGTGGGATTGAAAAAAGGGCCATGGACTGCTGAGGAAGACAAGAAGCTCATCACTTTTATCCTCACTAATGGTCAATGCTGCTGGAGGGCTGTCCCTAAATTGGCAGGGTTATTAAGGTGTGGTAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGACCGGATTTAAAAAGAGGACTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTACCAGGAAGGACAGATAATGAAATAAAAAATCATTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGGATCGACCCTATCACTCACAAACCACTAATTAGTAGTACAATTAATCAAACTCATAATCAAGCTAAACAACAACTACACCAACCGATAGAAGAAAAACAACAAAACCAACAACCTTTGACAATTGACATTGACACAAAGATTGAGAAGCAAGAGACTTCAATTGAATCATCAAGTAACATTGAAATGAAAGAAAAAGGTGAAATTACAATACCACCCTTATTTGACACAATGGAGTTAATTGATGGATTTTGTATAGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCAAATTCAACCTCTTCATCATCTACATCAAATTCAACCAATTTTCTTGAAGATCTCCAACTCCCTGATTTTGAATGGTCTAATAATGATAACAAGGAAGAGAAAAATAGCCACAATTTGGCTTTTTGGGATGATGACTTTATTAGTAGCTTGAATTTTATGATTAATGATGATGGTGGTTGTGTTAATAATGGTGAAAGAAAGCAAGCATTTGAAGCCATGATTGTGGATTCAGAATCTTGGGCATATGGATTGTTTTGA 915 0.3541 MGRQPCCEKVGLKKGPWTAEEDKKLITFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLISSTINQTHNQAKQQLHQPIEEKQQNQQPLTIDIDTKIEKQETSIESSSNIEMKEKGEITIPPLFDTMELIDGFCIDEVPMIEPNEIIVSNSTSSSSTSNSTNFLEDLQLPDFEWSNNDNKEEKNSHNLAFWDDDFISSLNFMINDDGGCVNNGERKQAFEAMIVDSESWAYGLF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01632 304 CDD SANT 16 61 IPR001005 -
Vifa1g01632 304 Gene3D - 11 67 - -
Vifa1g01632 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g01632 304 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vifa1g01632 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g01632 304 FunFam Myb transcription factor 71 133 - -
Vifa1g01632 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa1g01632 304 SMART sant 66 114 IPR001005 -
Vifa1g01632 304 SMART sant 13 63 IPR001005 -
Vifa1g01632 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g01632 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g01632 304 Gene3D - 71 116 - -
Vifa1g01632 304 CDD SANT 74 112 IPR001005 -
Vifa1g01632 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g01632 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 245 - -
Vifa1g01632 304 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01632 Vifa-Chr1 266683495 266686245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01632 1 304 MYB Transcription Factor Family AT5G16600 48.138 4.12e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01632 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01632 K09422 - gmx:100792103 430.254