Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01630 ATGGCTTCGTTATTCAAGGATCCCGCGAAGCTCTCAGCGTACCGGGACAGAAGATTCCCTGGAAATCAAGAAGAGTTTGAGCATGCTCTGATAACTTCATCAACCGTTTATGTTGGGAACATGTCGTTTTACACTACCGAAGAGCAAATTTACGAACTGTTTTCTCGAGCTGGTGAAATCAAGAAGATCATCATGGGTTTGGATAAGAACACTAAAACTCCTTGCGGATTTTGCTTCGTTTTGTACTACTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGTGGGACGATACTGGATGATCGTCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGACAATGGGGTCGCGGTCGTAGTGGTGGCCAGGTGCGTGACGAATATCGCACTGATTATGATCCAGGTAGGGGTGGATATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCAGTTATTCCTTCTTATGGTAGACATGGTGGTGGTCATGGTCACGGTGGTGGCCATGGTCATGGTGGTGGCCATCGGCATGGTAGAGATTACCACCATAGGAAGAGATACAGAGACGATGACCGCCACACACAGGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGGAGGAACGCTGACCATGAATCTAGACCGGAAAAAAATCCACGATTTCGGGAGAGTGGTGATTCTGATGATGAGGAGGAAGATGATCGAAAAAGACGGGGTTAA 780 0.4603 MASLFKDPAKLSAYRDRRFPGNQEEFEHALITSSTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSYGRHGGGHGHGGGHGHGGGHRHGRDYHHRKRYRDDDRHTQEPSKRTSDHESRRNADHESRPEKNPRFRESGDSDDEEEDDRKRRG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01630 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vifa1g01630 259 CDD RRM_NCBP2 36 113 IPR034148 -
Vifa1g01630 259 MobiDBLite consensus disorder prediction 203 259 - -
Vifa1g01630 259 Gene3D - 6 150 IPR012677 -
Vifa1g01630 259 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Vifa1g01630 259 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Vifa1g01630 259 MobiDBLite consensus disorder prediction 169 259 - -
Vifa1g01630 259 MobiDBLite consensus disorder prediction 120 139 - -
Vifa1g01630 259 MobiDBLite consensus disorder prediction 124 138 - -
Vifa1g01630 259 MobiDBLite consensus disorder prediction 188 202 - -
Vifa1g01630 259 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vifa1g01630 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Vifa1g01630 259 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 257 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01630 Vifa-Chr1 266365875 266369840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01630 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 26.667 1.38e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01630 K12883 - gmx:100776217 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01630 1 266365875 266369840 Vifa1g01630 1 266365875 266369840 ECH