Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01626 ATGCTAGCTGTATCACCATTGATGAGCACAAGAGATGAAAGCCAAAGAGAGATGGAGGAGAGTTTATCGATTGAAACATGTGATTTTGCTGATCTTTCCGAAGGGACTTTATTGGAAAGTATCGATTTCGAATTCGACGATGATTTCTTCGTGTGTTTCGACGAAGGAGACGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAGTTCTCACTCAGCGGCGGTGAAGAATCGGAGATGAATTCGTCGATTACTATTGTGGATAATAACAAGTTTTGTGATGATGGGAGTAATATAGTTAGTGTTGAGACAAAATTGCAAGAGGAAGGGAAACAAGGATCTTCTTCGGATTCGGGCTCGAGCCGCGGGGAAGAGATTGTTAGCAGAAGAGATGAATCTGTGGTGGTGATCAATCTAGTGAGTAAGGAAAGTGAGAAAGGAAGAAAATCATCATCTTCTACTCAATCAAAGAATAATCATCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACACCGGAGTTGCACAGAAGATTTGTACAAGCAGTAGAACAGCTAGGTGTGGATAAGGCTGTACCTTCAAGGATTTTAGAAATCATGGGAATTGACTGCCTTACTCGCCACAACATCGCAAGTCATCTTCAAAAATATCGATCTCATAGGAAGCATTTGCTAGCGCGCGAAGCTGAAGCTGCGAGCTGGACTCAGCGGAGGCAATTGTCTTGCAAGAGAGATGTGAACCATTGGGTTGCACCTACTATGGGTTTTCCTCCGATGACTCCACCGGTGCACCATTTTAGACCTTTACATGTATGGGGGCATCATCCCATGGATCAGTCCTTTATGCATATGTGGCCTAATTATTCGCCGCACCATCCAGCGCCTAATTGGGCGCCTCCACGGACAGCTCCGCCTCCGAACCCTTATTGGCACCAACGGGTTCAAAACACACCAACCGCAGGAACACCGTGCTTTCCACAGCCTCTGACAACAACGAGATTTGCCTCTCCAACTGTTCCGGGCATTCCTCCACCCCATGCAATGTACCAAGTAGATCCCGGCATGGCCGTCCCCTCCGCGCAACCATCTCCTCCGCCACACTTAGACTTCCATCCGTCAAAAGAGAGCATAGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGTCTTAAAGCTCCTGCACTTGAAGGTGTGATGGGTGAGTTACAGCGACAAGGAATTCCAAAAATCCCACCCTCTTGTGCTTGA 1269 0.4665 MLAVSPLMSTRDESQREMEESLSIETCDFADLSEGTLLESIDFEFDDDFFVCFDEGDVLPDLEMDPEMLAEFSLSGGEESEMNSSITIVDNNKFCDDGSNIVSVETKLQEEGKQGSSSDSGSSRGEEIVSRRDESVVVINLVSKESEKGRKSSSSTQSKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWTQRRQLSCKRDVNHWVAPTMGFPPMTPPVHHFRPLHVWGHHPMDQSFMHMWPNYSPHHPAPNWAPPRTAPPPNPYWHQRVQNTPTAGTPCFPQPLTTTRFASPTVPGIPPPHAMYQVDPGMAVPSAQPSPPPHLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQRQGIPKIPPSCA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01626 422 FunFam Two-component response regulator 163 226 - -
Vifa1g01626 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 167 221 IPR006447 GO:0003677
Vifa1g01626 422 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 421 IPR044825 GO:0003700|GO:0045893
Vifa1g01626 422 SUPERFAMILY Homeodomain-like 165 224 IPR009057 -
Vifa1g01626 422 MobiDBLite consensus disorder prediction 145 169 - -
Vifa1g01626 422 Gene3D - 164 225 - -
Vifa1g01626 422 MobiDBLite consensus disorder prediction 107 131 - -
Vifa1g01626 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 223 IPR017930 -
Vifa1g01626 422 MobiDBLite consensus disorder prediction 107 124 - -
Vifa1g01626 422 Pfam Myb-like DNA-binding domain 170 219 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01626 Vifa-Chr1 265689749 265692884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01626 1 328 G2-like Transcription Factor Family AT5G44190 40.000 2.53e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g01626 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01626 - - gmx:100775671 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01626 1 265689749 265692884 Vifa1g01626 1 265689749 265692884 ECH