Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01620 ATGGGTGTTGACTATTACAAGCTTCTTCAGGTTGATAGGAACGCTAAAGATGATGACTTGAAGAAAGCTTACAGGAAACTCGCTATGAAGTGGCATCCTGATAAGAACCCTAACAACAAGAAAGAAGCTGAAGCCAAATTTAAGCAAATCTCTGAAGCTTATGATGTTTTGAGTGATTCTCAGAAGAGGGCTATCTATGATCAATATGGGGAAGATGGTTTGAAGGGTCAAATGCCACCAACACCTGATGCTTTTGGTGGTGGTGGTGGTGGTGGGAACACTTATTATTCCCCTGCAGACATACCGGCTTCGTTTCGGTTCAATCAGCGGAATGCTGATGATATATTTGCTGAGTTTTTTGGGGTTTCAAGTCCCTTTGGGGGAATGGGAGGTTTAGGAAGAGGAGCTGGGGGTTCTGGTGGGATGAGAGTAAGGCTTCCGAATGGTATGTTTGTGGATAATGTGTTTGGATCATTTGGGGATGGAGGAGGAAGTGGAGGCCACATGCATCATCAAAGTGCTCCTCGCAAGGCGCCGCCGATTGAGAACAAATTGCCGTGCGCTCTGGAGGATATATATAAAGGGACTACGAGGAAGATGAAGATCACCAGAGAAGTTATTGATGTTCATGGCAAATCCATGCAGTTGGACGAGATCTTGACGATTAATATCAAACCTGGTTGGAAGAAGGGCACAAAGATCACCTTCCCTGAGAAGGGAAACGAGCATCCAAATTCTATACCTGCTGATATTGTGTTTGTCATCGATGAAAAACCACACAGCGTCTTCACTCGTGAAGGAAATGATCTGGTAGCCACTCAGAAGATCTCTCTTGCAGAAGCATTATCCGGCTGCACAGTGAATCTCACGACACTTGATGGTAGAAACTTGACTATAGTCGTCAACAATGTCGTTCATCCTGAGTATGAGGAAGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACATCAAATTCCCACCTCGGCTCAATGCGGATCAGAAATCGGGATTGAAGAAAGTCTTGGCTGCATAA 1071 0.4472 MGVDYYKLLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDSQKRAIYDQYGEDGLKGQMPPTPDAFGGGGGGGNTYYSPADIPASFRFNQRNADDIFAEFFGVSSPFGGMGGLGRGAGGSGGMRVRLPNGMFVDNVFGSFGDGGGSGGHMHHQSAPRKAPPIENKLPCALEDIYKGTTRKMKITREVIDVHGKSMQLDEILTINIKPGWKKGTKITFPEKGNEHPNSIPADIVFVIDEKPHSVFTREGNDLVATQKISLAEALSGCTVNLTTLDGRNLTIVVNNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNIKFPPRLNADQKSGLKKVLAA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01620 356 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vifa1g01620 356 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 354 - -
Vifa1g01620 356 CDD DnaJ_C 179 342 - -
Vifa1g01620 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 175 271 IPR008971 GO:0006457|GO:0051082
Vifa1g01620 356 Gene3D DnaJ domain 3 129 IPR036869 -
Vifa1g01620 356 CDD DnaJ 4 59 IPR001623 -
Vifa1g01620 356 FunFam DnaJ subfamily B member 13 260 340 - -
Vifa1g01620 356 Gene3D - 180 258 - -
Vifa1g01620 356 FunFam DnaJ subfamily B member 13 3 130 - -
Vifa1g01620 356 SUPERFAMILY Chaperone J-domain 3 92 IPR036869 -
Vifa1g01620 356 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vifa1g01620 356 FunFam Dnaj homolog subfamily b member 177 258 - -
Vifa1g01620 356 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vifa1g01620 356 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vifa1g01620 356 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vifa1g01620 356 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vifa1g01620 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 262 348 IPR008971 GO:0006457|GO:0051082
Vifa1g01620 356 SMART dnaj_3 3 62 IPR001623 -
Vifa1g01620 356 Pfam DnaJ domain 4 67 IPR001623 -
Vifa1g01620 356 Gene3D - 260 339 - -
Vifa1g01620 356 Pfam DnaJ C terminal domain 181 339 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01620 Vifa-Chr1 265090976 265093551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01620 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 4.53e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01620 K09510 - gmx:100778672 489.96