Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01613 ATGTTGTACCCATTGTTCCTCGTCGTGGTTCTGTTTTCTTCTTCCACGCACTCTCTCAACCAAGAAGGTCTTTTCCTCCTTCAAGCTAAACTTCAACTTTCTGACCCTTCAGATTCCCTCTCCACCTGGAACCACCGCGACCCCACTCCCTGCAACTGGACCGGCATCCTCTGCAACAACCTCACCTCCTCCGTCACCTCCATCAACCTCCCTAACTCCAACCTCTCCGGTCCCTTCCCCACTTCCCTCTGCCGTCTCTCTTCTCTCTCCTCCCTCTCTCTCCCCAACAACAACCTCAACTCATCCCTCCCCTCCACCATCTCTACCTGCACCACTCTCCGCCATCTCAACCTCTCCCAAAACCTCCTCTCCGGTCAACTCCCTTCCACTCTCTCCAACCTCCCCTTCCTCCAAATTCTCGATCTCTCCTTCAACAACTTCTCCGGCAACATCCCTCTAACCTTCGCCAACTTCAGCCATTTCCAACAACTCCAAACTATCTCCCTCGTTAACAACCTCTTCACCGGAACAATCCCTTCCTCTCTAAGCAACATCTCATCTCTCAAACAACTTCACCTCGCTTACAATACCTTCCTCTCTGAATCTCCAATCCCAACCGAATTCGGAAAACTCGTCAACCTTGAAACTCTATGGCTCTCCGGTTGCAACCTTGTCGGTCCCATTCCCGTTTCTCTTCGTAAACTCGTTAATCTCAAGAACCTCGACTTATCGCAGAACATGCTCAACGGAACTATACCGGAATCTGTGATATCCGGTTTAACCAGCATTGTTCAAATCGAGCTTTACCAGAACTCTTTCTCCGGCGAGTTGCCGCATATTGGTGTATCAAACTTGACTCGGTTGGAACGTTTCGATGCTTCGGATAACGACTTGACCGGGACGATTCCGGCCGAGTTGTGTAGTTTGAAGAATCTCGGGTCTCTTAATTTGTACAATAATCGACTCGAGGGTTCTCTGCCGGAGAGTTTAGCTTCATCGGAGAGTTTATACGTGCTACTTTTGTTCAACAACTCACTCTCCGGGAATTTACCAACTGGTTTAGGGAGCAAGTCGAGGTTACAGATGCTTGATGTTTCGTTTAATCGATTCACCGGCGAGATTCCGGGGAATCTTTGCCGTCAAGGAACGTTGCAGGAGTTGTTGATGATTCACAATTCGTTTTCCGGGGAAATTCCGGAGAGTCTTGGAAACTGTTTGAGCTTAACTAGGGTTAGGCTTGGGAACAATAATCTCTCTGGTGTTGTTCCTTCTGGTCTTTGGGGTTTGCCCCATGTGTATCTACTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCAATTTCTAATGCAATTTCAAGAGCAAGTAATCTTTCAGTTTTGTTGATTTCAGGGAATAGGTTTAACGGGTCGATTCCCGATTCAATCGGGTCGTTGAATAATCTTGGAGTGTTTGTTGCTAGCAGGAATAGTCTTACCGGTCGGATTCCGAGCAGTATGGTTAAGTTAAACCAGTTGGGCAGGCTTGTTCTTAGAGATAATCAATTTTCTGGTGAGATACCTCATGGGGTTGGTGATTGGAAGAAGCTCAATGAGCTTGATTTGGCAAATAATAGGTTTGTTGGTAATATTCCAAGTGAATTAGGAACCTTGCCGGGGCTTAATTTTCTTGATCTTTCGGGTAATTTACTTTCTGGTGAAATTCCAATGGAGCTGCAAAATTTGAAGCTTAATTTTTTTAATCTGTCTAATAACCAGTTATCAGGGAAAATTCCGCCTCTTTATGCTAATGAGAATTTTAAGGATAGTTTTGTAGGAAATACTGGCCTATGCCGCGATATCTCTGAATTGTGTCCGAATTTTGGTGAGAAGAGTAAGAATAAGAACTTTGTATGGGTTTTCAGGTTAATATTTGTACTTGCTGGTGTTGTGTTAATTGTCGGGGTGGCGTGGTTTTACTTCAAATTCCGGAATTTCAAGAAGACGAAGAAAGGATTTCATTTGTCGAAATGGAGGTCATTTCATAAAATAGGGTTTAGTAAGTTCGAGATAGTTAAATTGATGAGTGAAGATAACGTGATAGGGAGTGGATCGTCTGGGAAGGTTTACAAAGTGGTGTTGAGTAACGGAGAGACAGTTGCGGTGAAGAAATTGTGGGGAGCAAAGAAGACAGAAAATGGAAATGCCGGTGATCCTGAAAAGGATGGATTTGAAGTTGAAGTTGAAACATTGGGAAATATTAGGCACAAGAATATCGTAAGGTTATGGTGTTGTTATAACAATGGTGATAGTAAGCTTCTTGTTTACGAGTACATGCCAAATGGAAGCATTGCTGATTTTTTGCATAGTAGCAAGAAAAGGTTCTTGGATTGGTCAACTAGACTTAAAATCGCTATCGATGCGGCCGAAGGACTCTCTTACTTGCATCATGATTGTGTTGTTCCTATTGTCCATAGAGATGTAAAATCTAGTAACATTTTGCTTGATGAAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTTGCGAAATTTGTTAGAGGTGTCAGCAATGGGAAAGAAGAACCCATGTCTATGATTGCAGGATCTTATGGTTACATTGCACCAGAATATGCTTATACTCTAAGGGTGAATGAAAAGAGTGACATTTATAGTTTCGGTGTAGTGATTTTGGAGTTGGTAACTGGAAAACAACCTATTGATCAAGAGTATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCGAAATTGAACGAGGAAGAACTGGATCAAGTGATTGATCCAACTCTTGATTATTCAAAATACAAGGAAGAAATAAACAAAGTACTCAAGCTGGGAATTCTTTGCACAAGCTCTCTTCCTATAAACCGTCCTTCAATGAGAAGTGTGGTGAGAATGCTGCAGGAAGTAACATCAGTTGCCAAATCCAGAAGTGGAAGATTCTCTCCTTACTATCAAGAAGTAGTCTCTGATAATGATCATTAG 2976 0.4284 MLYPLFLVVVLFSSSTHSLNQEGLFLLQAKLQLSDPSDSLSTWNHRDPTPCNWTGILCNNLTSSVTSINLPNSNLSGPFPTSLCRLSSLSSLSLPNNNLNSSLPSTISTCTTLRHLNLSQNLLSGQLPSTLSNLPFLQILDLSFNNFSGNIPLTFANFSHFQQLQTISLVNNLFTGTIPSSLSNISSLKQLHLAYNTFLSESPIPTEFGKLVNLETLWLSGCNLVGPIPVSLRKLVNLKNLDLSQNMLNGTIPESVISGLTSIVQIELYQNSFSGELPHIGVSNLTRLERFDASDNDLTGTIPAELCSLKNLGSLNLYNNRLEGSLPESLASSESLYVLLLFNNSLSGNLPTGLGSKSRLQMLDVSFNRFTGEIPGNLCRQGTLQELLMIHNSFSGEIPESLGNCLSLTRVRLGNNNLSGVVPSGLWGLPHVYLLELVENSLSGSISNAISRASNLSVLLISGNRFNGSIPDSIGSLNNLGVFVASRNSLTGRIPSSMVKLNQLGRLVLRDNQFSGEIPHGVGDWKKLNELDLANNRFVGNIPSELGTLPGLNFLDLSGNLLSGEIPMELQNLKLNFFNLSNNQLSGKIPPLYANENFKDSFVGNTGLCRDISELCPNFGEKSKNKNFVWVFRLIFVLAGVVLIVGVAWFYFKFRNFKKTKKGFHLSKWRSFHKIGFSKFEIVKLMSEDNVIGSGSSGKVYKVVLSNGETVAVKKLWGAKKTENGNAGDPEKDGFEVEVETLGNIRHKNIVRLWCCYNNGDSKLLVYEYMPNGSIADFLHSSKKRFLDWSTRLKIAIDAAEGLSYLHHDCVVPIVHRDVKSSNILLDEEFGAKIADFGVAKFVRGVSNGKEEPMSMIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKQPIDQEYGEKDLVKWVSSKLNEEELDQVIDPTLDYSKYKEEINKVLKLGILCTSSLPINRPSMRSVVRMLQEVTSVAKSRSGRFSPYYQEVVSDNDH 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01613 991 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Vifa1g01613 991 Gene3D Ribonuclease Inhibitor 258 331 IPR032675 -
Vifa1g01613 991 Gene3D Ribonuclease Inhibitor 202 257 IPR032675 -
Vifa1g01613 991 ProSiteProfiles Protein kinase domain profile. 686 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01613 991 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Vifa1g01613 991 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 179 - -
Vifa1g01613 991 SUPERFAMILY Protein kinase-like (PK-like) 686 964 IPR011009 -
Vifa1g01613 991 SUPERFAMILY L domain-like 34 375 - -
Vifa1g01613 991 Gene3D Phosphorylase Kinase; domain 1 670 769 - -
Vifa1g01613 991 FunFam Receptor-like protein kinase HSL1 311 618 - -
Vifa1g01613 991 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 770 978 - -
Vifa1g01613 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 188 966 - -
Vifa1g01613 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Vifa1g01613 991 FunFam Receptor-like protein kinase HSL1 669 769 - -
Vifa1g01613 991 Pfam Protein kinase domain 688 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01613 991 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vifa1g01613 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 277 - -
Vifa1g01613 991 SMART serkin_6 686 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01613 991 Gene3D Ribonuclease Inhibitor 19 201 IPR032675 -
Vifa1g01613 991 Gene3D Ribonuclease Inhibitor 332 618 IPR032675 -
Vifa1g01613 991 SUPERFAMILY RNI-like 282 590 - -
Vifa1g01613 991 SMART LRR_typ_2 309 332 IPR003591 -
Vifa1g01613 991 SMART LRR_typ_2 134 157 IPR003591 -
Vifa1g01613 991 SMART LRR_typ_2 235 259 IPR003591 -
Vifa1g01613 991 SMART LRR_typ_2 501 525 IPR003591 -
Vifa1g01613 991 SMART LRR_typ_2 86 110 IPR003591 -
Vifa1g01613 991 Gene3D Transferase(Phosphotransferase) domain 1 770 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01613 Vifa-Chr1 264348181 264351284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01613 15 988 Receptor kinase-like Gene Family AT1G28440 58.065 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g01613 Pkinase 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01613 - - gmx:100778128 1262.28