Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01612 ATGACTCGGTGTAGTTACCCTGAAGAGAATAATCATAGTGTTCTTATGGAGAGACGCAAAGATAGCATAATCAGAACTTGTCCTACTTGTGGTCATCATATCAAATGCCAAGATCAGGGTGCTGGAATTCATGAGTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAAGTGAGGTCTGATATTCAAATGCTTCACCCTTTGATCGATGAATTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGCACTCACCCAGAGAAGTTGCCAGGTGTAAGCAAAGATGGCTTGATCAGACATTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTGCACACAGATTCAGATGGAAGTGAAACAAGGTGGCACAAAACAGAGAAAACAAATTGGGTTATGCATCAGTACCATCTTGGAAACAATGAAGAGGAGAAAGAAGGAGAATTGGTAGTTTCCAAAGTTTTCTACCAAACACAACCAAGACAATGTGGTTCGTTGATGAAAGACTCGTCATCATTTTCCGATCAAAAACTAATCGGCGATCAAGTTGTTAATGAGGTGGTTAATCATAAAAACAGTGGATTTGTTGAGTATTATAATACTTCTTTCATATCTTTTGATCAAGGGGAACAACATAGATCAAACAATGCTCAAGTGATTTCTCATTTTCCTGTCCATGATGGTACTTCTTTCATTCCTTGA 762 0.3911 MTRCSYPEENNHSVLMERRKDSIIRTCPTCGHHIKCQDQGAGIHELPGLPAGVKFDPTDQEILEHLEAKVRSDIQMLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDSDGSETRWHKTEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSSSFSDQKLIGDQVVNEVVNHKNSGFVEYYNTSFISFDQGEQHRSNNAQVISHFPVHDGTSFIP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01612 253 ProSiteProfiles NAC domain profile. 49 210 IPR003441 GO:0003677|GO:0006355
Vifa1g01612 253 MobiDBLite consensus disorder prediction 122 141 - -
Vifa1g01612 253 Gene3D NAC domain 58 143 IPR036093 GO:0003677|GO:0006355
Vifa1g01612 253 Pfam No apical meristem (NAM) protein 50 149 IPR003441 GO:0003677|GO:0006355
Vifa1g01612 253 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 145 211 IPR044799 GO:0003700
Vifa1g01612 253 SUPERFAMILY NAC domain 44 177 IPR036093 GO:0003677|GO:0006355
Vifa1g01612 253 Gene3D NAC domain 144 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01612 Vifa-Chr1 264285064 264286341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01612 25 196 NAC Transcription Factor Family AT4G28500 66.667 1.50e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g01612 NAM 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01612 - - gmx:100791648 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01612 1 264285064 264286341 Vifa1g01612 1 264285064 264286341 ECH