Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01610 ATGGACAATAGAGAAATAATTTCAAATGGTTTACTTCATGAAAACACAACAAGTTCATCAAATGATAATCTTCCTATTTTAAAGAGGAAGAGAAACCTCCCTGGAAATCCCGATCCTGAAGCTGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAACAGATTTGTTTGTGAGATATGTCTAAAGGGTTTTCAAAGGGATCAAAACCTTCAACTTCATCGACGCGGACATAACCTTCCTTGGAAGCTCAAACAAAGAACAAACAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGACTTGTGTTCACAATCATCCTTCAAGGGCTTTAGGAGACTTAACTGGGATAAAAAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGTTTTATGCTGTTCAATCGGATTGGAAAGCACACTCAAAGACTTGTGGTACCAGAGAATACAAATGCGACTGTGGCACTATCTTTTCAAGGAGGGATAGCTTTGTGACTCACAGGGCATTCTGTGAAGCCTTATCAGAAGAAACAGCTAGAGTAAACGGATCAACAAACTCATTACTAGCAATGGGAGGTTACAACAACATCATGCAAGAGTCTCTTGTCCCTAATCATTTTTCTTCAATTTTCAAGCCTATTTCATGCACAGATCAATCATCTAGATCAGGTCTATCCCTTTGGATGTCTCAAACATCTCATGACTTTAATGACAACAGCAATTTGCATGAGATTCATCAACTTGAAAACCCACCACCACACTCAAATTATCATCTAAATTGGGTTTATGGAAATAAACTGTCCTCTAATATTGGTTCCCAAGAGTTAACTAGCACTGTTTCACTTCCACTGGTCAATAGCAACAACAACATTGATAAGGATAGTGTAAGTGCAAACAATCTTGTTAGTGTTCCTTCCTTATATAGCTCACAACACCAACACCAACCTCAATCTCACAATCAAACATCCTCAGCAAACATGTCAGCAACAGCTTTGTTACAAAAAGCTTCTCAGATTGGGACAACTTCAAGTGAGTCATTGTTCCTTGGAAGCTTAGGACCCTTGAGATGCAATACTTCAAATCAAGATCTTGGGAATAAATTCACAACAATCCATGAGACAGAAGGTAACTATTCAGGTGAATTGTCACAAATGCCCCCGACAAAACGACGACGCATGCATAATGAAGAGACTGTGTGGGGACAAACTAGGGATTTCCTTGGTGTTGGTGGTGCTAACCATTTGCACCCCTTCATGAATCAACGGATGGATTTGATTTGA 1311 0.3921 MDNREIISNGLLHENTTSSSNDNLPILKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCEALSEETARVNGSTNSLLAMGGYNNIMQESLVPNHFSSIFKPISCTDQSSRSGLSLWMSQTSHDFNDNSNLHEIHQLENPPPHSNYHLNWVYGNKLSSNIGSQELTSTVSLPLVNSNNNIDKDSVSANNLVSVPSLYSSQHQHQPQSHNQTSSANMSATALLQKASQIGTTSSESLFLGSLGPLRCNTSNQDLGNKFTTIHETEGNYSGELSQMPPTKRRRMHNEETVWGQTRDFLGVGGANHLHPFMNQRMDLI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01610 436 Gene3D Classic Zinc Finger 90 181 - -
Vifa1g01610 436 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vifa1g01610 436 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 423 IPR031140 -
Vifa1g01610 436 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g01610 436 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Vifa1g01610 436 MobiDBLite consensus disorder prediction 9 26 - -
Vifa1g01610 436 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Vifa1g01610 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vifa1g01610 436 MobiDBLite consensus disorder prediction 318 338 - -
Vifa1g01610 436 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01610 Vifa-Chr1 264260823 264262638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01610 23 420 IDZ Gene Family AT1G03840 49.057 3.55e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g01610 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01610 K25870 - gmx:100778666 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01610 1 264260823 264262638 Vifa1g01610 1 264260823 264262638 ECH