Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01579 ATGGCACAATTACCTCCCAAGATTCCTAACATGTCACCAAGTTGGCCAGATTTTTCAACTCATCAAAAAAACATTATGCCAACATCCGTTTCAACCAACAACCTTGTCTTCAACAACAACGTTAACACAAACAGTTATCATCAGAATCAAAACCCTTCATGGGTGGACGAGTTTCTCGACTTCTCGTCCGCAAGGCGAGGAGCTCACCGTCGGTCTGTCAGCGACTCCGTTGCATTCTTAGAATCGCCAATGTTCGATGATTGTCCCGGGAAAAATGGTGAAAACAATATTAATGATGATGACAACGAGTTCGACAAGTTTGATGATGAACAGTTTATGTCCATGTTCAACGATGAAATATCTGGTGTACATAATATGCCGCCCATATTGTCCTCGTCGAATGCTTCGAGTCCTTCTGATCAGAACTTTGTCAACAATGAGAATGAGAATGAGAATGAGATGATGAATAAGGAAGAGAAGAAGGAAAGTGATTTGAGAGAGATGAAGAAAGAGGAAGATGATGAGAAGCAATTGAAAAATGAACCTGAGGAGGTTGAAAGTCAATGCCAACAGGAAAATTCACAGCCTCAAAATAACAACAACAATTCATCTTCTTCTAATGACAGAATTACTGATCCTAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCGGCGCAAAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGAAGTGTAACTTCATTACAGGCCGAAGTTTCGGTGCTTTCTCCACGAGTTGCATTTTTGGATCATCAACGTTTGCTTCTAAATGTTGACAATAGTGCTCTCAAGCAAAGAATTGCAGCTCTTGCTCAAGACAAGATTTTCAAAGATGCTCATCAAGAGGCACTGAAAAGGGAGATAGAGAGATTAAGACAAGTATATAACCATCAAAATCTCACAAAGATGGAAAATGCAACAGGTTCACCTTTACCATCTCCATCACAAAAGCCATTATGTGATCCTCAGCCAGAAAATGAACAACTTTTCAATGGAAACACATGTGCAGCAGTGGCATCAAAAGAAAGGGTGGAAGAAACAGTTGTGTCTGCTTTAACTTAA 1098 0.4035 MAQLPPKIPNMSPSWPDFSTHQKNIMPTSVSTNNLVFNNNVNTNSYHQNQNPSWVDEFLDFSSARRGAHRRSVSDSVAFLESPMFDDCPGKNGENNINDDDNEFDKFDDEQFMSMFNDEISGVHNMPPILSSSNASSPSDQNFVNNENENENEMMNKEEKKESDLREMKKEEDDEKQLKNEPEEVESQCQQENSQPQNNNNNSSSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYNHQNLTKMENATGSPLPSPSQKPLCDPQPENEQLFNGNTCAAVASKERVEETVVSALT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01579 365 Coils Coil 141 188 - -
Vifa1g01579 365 MobiDBLite consensus disorder prediction 187 209 - -
Vifa1g01579 365 PANTHER BASIC LEUCINE ZIPPER 34 1 330 - -
Vifa1g01579 365 MobiDBLite consensus disorder prediction 151 186 - -
Vifa1g01579 365 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 264 IPR004827 GO:0003700|GO:0006355
Vifa1g01579 365 FunFam Basic leucine zipper 61 213 286 - -
Vifa1g01579 365 SMART brlzneu 210 274 IPR004827 GO:0003700|GO:0006355
Vifa1g01579 365 MobiDBLite consensus disorder prediction 126 150 - -
Vifa1g01579 365 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g01579 365 Gene3D - 213 285 - -
Vifa1g01579 365 SUPERFAMILY Leucine zipper domain 214 268 IPR046347 GO:0003700|GO:0006355
Vifa1g01579 365 Coils Coil 293 313 - -
Vifa1g01579 365 CDD bZIP_plant_RF2 215 265 IPR044759 GO:0003700|GO:0006355
Vifa1g01579 365 Pfam bZIP transcription factor 214 258 IPR004827 GO:0003700|GO:0006355
Vifa1g01579 365 MobiDBLite consensus disorder prediction 123 213 - -
Vifa1g01579 365 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
Vifa1g01579 365 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01579 Vifa-Chr1 260596397 260598878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01579 1 291 bZIP Transcription Factor Family AT3G58120 54.934 7.02e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g01579 bZIP_2 4.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01579 - - gmx:100101874 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01579 1 260596397 260598878 Vifa1g01579 1 260596397 260598878 ECH