Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01576 ATGAGTAATTTCAATGATGGTCGTAACCATGATAATGATAATTTTTATCCATTTGGAAATTTTGATCATGGATCGAGTCAAAGCAACTTCAACAAAAAAATATTGTTAACCGCAATATGTTCTTTAATACTAGTATTGGTTTTGGTGTTGGCTCTTCATCTTTACGCCAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGAGCCGCCATTCATCAACTCAGCCTCACCGTTGCTCATGCTCACGTTCAATTCGCCGATCCGTCAAACTCCGGACTCGATCCCACGCTCATTGCCACTCTTCCCACTTTCCTTTTCAAACAAAAAGAAAAACTAGATGAAGAACAAAACAACAATGTTTCTAATAACATTGTTGAATGCGCAGTGTGTTTGAGTTTGTTAGAAGATGGAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCACGTGAGTTGTATCGATATGTGGTTAGCTTCACATTCCACCTGTCCTATTTGTCGAACCAAGGTTGAACCTCGCCTTGAACCAGAGACGCGCGAGGGTCCCACTTGGTTTAAACCATCATCGGAAAGTACTTCCGATGCTGCTGATTCTATTAACGAGTCTCCCAAGAATATTTCTCGATTAAGTTCTTTTCAGAGGATTCTTACTAGAGATAGATCTTCGAGAAGAATTCGACCTTCTCATAGTACTCATGTCGATAATATTAATGATCGTGATTTAGAGAGACAGTGA 738 0.4024 MSNFNDGRNHDNDNFYPFGNFDHGSSQSNFNKKILLTAICSLILVLVLVLALHLYARYVLKRQARRRAAIHQLSLTVAHAHVQFADPSNSGLDPTLIATLPTFLFKQKEKLDEEQNNNVSNNIVECAVCLSLLEDGEMMRLLPNCKHSFHVSCIDMWLASHSTCPICRTKVEPRLEPETREGPTWFKPSSESTSDAADSINESPKNISRLSSFQRILTRDRSSRRIRPSHSTHVDNINDRDLERQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01576 245 MobiDBLite consensus disorder prediction 185 207 - -
Vifa1g01576 245 SUPERFAMILY RING/U-box 99 174 - -
Vifa1g01576 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 174 IPR013083 -
Vifa1g01576 245 FunFam E3 ubiquitin-protein ligase ATL6 80 174 - -
Vifa1g01576 245 CDD RING-H2_EL5-like 125 168 - -
Vifa1g01576 245 MobiDBLite consensus disorder prediction 219 245 - -
Vifa1g01576 245 Pfam Ring finger domain 125 168 IPR001841 -
Vifa1g01576 245 SMART ring_2 126 167 IPR001841 -
Vifa1g01576 245 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Vifa1g01576 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 220 - -
Vifa1g01576 245 MobiDBLite consensus disorder prediction 175 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01576 Vifa-Chr1 259888002 259888739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01576 2 245 C3H Transcription Factor Family AT2G42360 44.574 1.50e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01576 K19038 - gmx:100796057 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01576 1 259888002 259888739 Vifa1g01576 1 259888002 259888739 ECH