Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01573 ATGGGAATGAAGAGTACTGGTGGAGAAATAGTTCAAGTTCAAGGAGGTCACATTGTTAGAGCAACAGGTAGAAAAGATAGACATAGTAAGGTATACACTGCGAAAGGCCCTCGCGATCGGCGCGTTCGATTATCAGCACATACCGCGATTCAATTCTACGATGTTCAAGATCGGCTCGGCTACGATAGGCCGAGTAAAGCTGTTGATTGGCTTATCAAGAAGGCTAAGTCTGCTATTGATAAGCTTGATGAGCTTCCTCCTTGGAATCCAATTCAAAATGCAGCACAAGAGTTTCAAGAGGAAGAGAATAATAACCATAATGGTTTAGAAACAAGTGAACTGGTTATTGCAGGAGAAAATTCAGAATCTTCTGGTTACAATTTGCAGCAGAATAATCAGCATAACCATAATCATGCAGGTTTCATTCAATCAAGTATTGATAATGATGCTATAGCGTTTTTTCCTACGAGTTCCGTTGGTGATTCCATGAATTTTCAAAGCTACTCTTCTGATATAATCTCAAGAACAAACAACTCAACACAGGATCTTGGTCTTTCACTTCATTCATTCCAAGATAATCCAGTTTCAAATGATCAAACACTTTTCTCTGGATCAAATCATGTTGGATTTGATGCTAACTATCATAGGATTGTGAATTGGAACAATGATCATCATGAATCAACAACTGATATGAGTATGAATATGAATATGAATATGAGTATGAATATGAATATGAATACGAATAGAACAGGTTTCATGGTTAATTCGCCTGCGCCATTTCTAGGCCAAGGTTCGGCCTTTTCCGCCCATAGGGGGACCCTTCAGTCCAGTTTTTCGCCATCGATTCGTCCTTGGAATGATATTCCAATGGCGGATTCGTCTGTTGATCATCATAATCAGAAATCTCAGCAACCGATTCACCATGGTTCCATCTTTGGTAGCAGGTTTTTGTCTGATGCTTTGACAGGTTTCTGTATTCCTGCTAGAATTCAAGGAGAAGATGAAAGCCATGGAGTTGGCTCGGAACAGCCTTCCTCATCTTCTAATTCGCATCACTAA 1059 0.3985 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDELPPWNPIQNAAQEFQEEENNNHNGLETSELVIAGENSESSGYNLQQNNQHNHNHAGFIQSSIDNDAIAFFPTSSVGDSMNFQSYSSDIISRTNNSTQDLGLSLHSFQDNPVSNDQTLFSGSNHVGFDANYHRIVNWNNDHHESTTDMSMNMNMNMSMNMNMNTNRTGFMVNSPAPFLGQGSAFSAHRGTLQSSFSPSIRPWNDIPMADSSVDHHNQKSQQPIHHGSIFGSRFLSDALTGFCIPARIQGEDESHGVGSEQPSSSSNSHH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01573 352 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Vifa1g01573 352 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 306 IPR005333 GO:0003700
Vifa1g01573 352 Pfam TCP family transcription factor 23 134 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01573 Vifa-Chr1 259023030 259024088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01573 8 349 TCP Transcription Factor Family AT3G15030 41.133 7.61e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g01573 TCP 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01573 - - gmx:100814907 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01573 1 259023030 259024088 Vifa1g01573 1 259023030 259024088 ECH