LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01555	ATGCTCGCTGCCGCCTCGAGGTACGCCAGACCCACCACCGGCGGCGGCAATCGTGTACGATCACTTCTATCTTTTTCCGCCATCACCACAACTTACTCAATTCCCACCACAACATGTCACTGTTACGGTTACAGTAACGGAATCAGTTTCAATAACCGCACCACCCGAACATGTCCAACCTTACTTTTCTCTGTGAAAGGATTTCTCTCTGATTCATCATCATCTTCATCATACGGCAGAAATTCGAAGGTGGATGGAAGAGCGCTGTTCTCTACTTCAGCTAAAACTGATGATGGAAGTCAGAACCAAAAGAATTCTACTGTTGCTAAATTGCCTCCACCTGGTGGACAAGTTGCCGATATCAAGATCCTTCGAGTGCTTGCGAGTTACCTTTGGATGAAAGATAATCTTGAGTTTCGGTTTCGGGTTGTTGCCGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGAATACTGCCACGGGCAATGCTGGCGCTGTTGCTTCGAATCCTACTGTGATGGCGCTTTTTGCTACTCCCGTGGCAGTATTGATTGGATACGGGATTGCACGTTCTGGAGCTTCTGCCTTCAACGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCACTGCGAACAATTCGATTAGTTTCAAGAAAGGTTTTTTCACATTTGCACGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACCGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCACTGTCAGTTGCCGCTTATGTTGTTTTCACACTTTCTATCACCCAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGATGCAAGTACTAGGGTTATTGATTCACTTATTAACTATGAGACGGTCAAATATTTCAATAATGAAGCTCATGAAACTGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCAACAGCAATGGTTCTGTGTTCTCAGGGGATCATGAATGGCTCAATGACTGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTGTCTCTTCCCCTCAATTTCCTTGGTAGTGTTTATCGCGAAACTATACAGAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAGAGCAGACATTAAGGACAAAGAAAATGCCAAGCCTCTCAAACTTACTGGGGGGAAGGTTCAATTTGAGAATGTACATTTTGGTTACCTCACAGAAAGAAAGATACTAGATGGGATATCATTACTTGTACCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGATATAACCCTTGAGAGTTTACGAAAGTCTATTGGCGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAGAAGAGGAGGTCTATGAAGCTTCCCGTCAAGCAGCAATCCATGATACTATCATGAATTTTCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTCAAGCTAAGTGGCGGTGAGAAGCAGCGTGTTGCTCTTGCTCGAGCTTTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCAGTATCAAAGAATCGAACTTCCATATTCATTGCACACAGGCTCACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGAAAGGTGGTTGAGCATGGGCCACATGAAATGCTCTTAGAAAATGCAGGAAGATATGCACAGCTTTGGGGACAACAAAATAACTCTATTGATTCAATTGACGCAGCTATCAAATTGGGAGTATAA	2178	0.4215	MLAAASRYARPTTGGGNRVRSLLSFSAITTTYSIPTTTCHCYGYSNGISFNNRTTRTCPTLLFSVKGFLSDSSSSSSYGRNSKVDGRALFSTSAKTDDGSQNQKNSTVAKLPPPGGQVADIKILRVLASYLWMKDNLEFRFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAGAVASNPTVMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRVIDSLINYETVKYFNNEAHETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSQGIMNGSMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEERADIKDKENAKPLKLTGGKVQFENVHFGYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDITLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEASRQAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVSKNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEMLLENAGRYAQLWGQQNNSIDSIDAAIKLGV	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01555	725	CDD	ABC_6TM_ATM1_ABCB7	146	449	-	-
	Vifa1g01555	725	SMART	AAA_5	500	686	IPR003593	GO:0016887
	Vifa1g01555	725	Pfam	ABC transporter	491	640	IPR003439	GO:0005524
	Vifa1g01555	725	CDD	ABCC_ATM1_transporter	475	710	-	-
	Vifa1g01555	725	SUPERFAMILY	ABC transporter transmembrane region	138	454	IPR036640	GO:0005524\|GO:0016020
	Vifa1g01555	725	Pfam	ABC transporter transmembrane region	144	428	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vifa1g01555	725	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	69	706	IPR039421	-
	Vifa1g01555	725	Gene3D	ABC transporter type 1, transmembrane domain	130	465	IPR036640	GO:0005524\|GO:0016020
	Vifa1g01555	725	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	475	709	IPR003439	GO:0005524
	Vifa1g01555	725	ProSitePatterns	ABC transporters family signature.	612	626	IPR017871	GO:0005524\|GO:0016887
	Vifa1g01555	725	MobiDBLite	consensus disorder prediction	93	113	-	-
	Vifa1g01555	725	FunFam	ABC transporter B family member 25	467	721	-	-
	Vifa1g01555	725	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	464	710	IPR027417	-
	Vifa1g01555	725	FunFam	ATP-binding cassette sub-family B member 7	116	463	-	-
	Vifa1g01555	725	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	144	441	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vifa1g01555	725	Gene3D	-	466	721	IPR027417	-
	Vifa1g01555	725	MobiDBLite	consensus disorder prediction	93	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01555	Vifa-Chr1	255870630	255886120	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01555	311	711	Calmodulin-binding Proteins	AT2G36910	35.194	4.69e-63	227

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01555	K05662		-	gmx:100779975	1145.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g01555	1	255870630	255886120	Vifa1g01555	1	255870630	255886120	ECH