Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01554 ATGCTCGCTGCCGCCTCGAGGTACGCCAGACCCACCACCGGCGGCGGCAATCGTGTACGATCACTTCTATCTTTTTCCGCCATCACCACAACTTACTCAATTCCCACCACAACATGTCACTGTTACGGTTACAGTAACGGAATCAGTTTCAATAACCGCACCACCCGAACATGTCCAACCTTACTTTTCTCTGTGAAAGGATTTCTCTCTGATTCATCATCATCTTCATCATACGGCAGAGTAACTAACCCCTTTATACTACAATCTAATTCGAAGGTGGATGGAAGAGCGCTGTTCTCTACTTCAGCTAAAACTGATGATGGAAGTCAGAACCAAAAGAATTCTACTGTTGCTAAATTGCCTCCACCTGGTGGACAAGTTGCCGATATCAAGATCCTTCGAGTGCTTGCGAGTTACCTTTGGATGAAAGATAATCTTGAGTTTCGGTTTCGGGTTGTTGCCGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGAATACTGCCACGGGCAATGCTGGCGCTGTTGCTTCGAATCCTACTGTGATGGCGCTTTTTGCTACTCCCGTGGCAGTATTGATTGGATACGGGATTGCACGTTCTGGAGCTTCTGCCTTCAACGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCACTGCGAACAATTCGATTAGTTTCAAGAAAGGTTTTTTCACATTTGCACGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACCGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCACTGTCAGTTGCCGCTTATGTTGTTTTCACACTTTCTATCACCCAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGATGCAAGTACTAGGGTTATTGATTCACTTATTAACTATGAGACGGTCAAATATTTCAATAATGAAGCTCATGAAACTGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCAACAGCAATGGTTCTGTGTTCTCAGGGGATCATGAATGGCTCAATGACTGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTGTCTCTTCCCCTCAATTTCCTTGGTAGTGTTTATCGCGAAACTATACAGAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAGAGCAGACATTAAGGACAAAGAAAATGCCAAGCCTCTCAAACTTACTGGGGGGAAGGTTCAATTTGAGAATGTACATTTTGGTTACCTCACAGAAAGAAAGATACTAGATGGGATATCATTACTTGTACCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGATATAACCCTTGAGAGTTTACGAAAGTCTATTGGCGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAGAAGAGGAGGTCTATGAAGCTTCCCGTCAAGCAGCAATCCATGATACTATCATGAATTTTCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTCAAGCTAAGTGGCGGTGAGAAGCAGCGTGTTGCTCTTGCTCGAGCTTTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCAGTATCAAAGAATCGAACTTCCATATTCATTGCACACAGGCTCACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGAAAGGTGGTTGAGCATGGGCCACATGAAATGCTCTTAGAAAATGCAGGAAGATATGCACAGCTTTGGGGACAACAAAATAACTCTATTGATTCAATTGACGCAGCTATCAAATTGGGAGTATAA 2205 0.4204 MLAAASRYARPTTGGGNRVRSLLSFSAITTTYSIPTTTCHCYGYSNGISFNNRTTRTCPTLLFSVKGFLSDSSSSSSYGRVTNPFILQSNSKVDGRALFSTSAKTDDGSQNQKNSTVAKLPPPGGQVADIKILRVLASYLWMKDNLEFRFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAGAVASNPTVMALFATPVAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRVIDSLINYETVKYFNNEAHETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSQGIMNGSMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEERADIKDKENAKPLKLTGGKVQFENVHFGYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDITLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEASRQAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVSKNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEMLLENAGRYAQLWGQQNNSIDSIDAAIKLGV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01554 734 Gene3D - 475 730 IPR027417 -
Vifa1g01554 734 FunFam ATP-binding cassette sub-family B member 7 125 472 - -
Vifa1g01554 734 Gene3D ABC transporter type 1, transmembrane domain 139 474 IPR036640 GO:0005524|GO:0016020
Vifa1g01554 734 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 104 715 IPR039421 -
Vifa1g01554 734 CDD ABCC_ATM1_transporter 484 719 - -
Vifa1g01554 734 MobiDBLite consensus disorder prediction 102 119 - -
Vifa1g01554 734 CDD ABC_6TM_ATM1_ABCB7 155 458 - -
Vifa1g01554 734 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 718 IPR003439 GO:0005524
Vifa1g01554 734 Pfam ABC transporter 500 649 IPR003439 GO:0005524
Vifa1g01554 734 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 153 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g01554 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 719 IPR027417 -
Vifa1g01554 734 SUPERFAMILY ABC transporter transmembrane region 147 463 IPR036640 GO:0005524|GO:0016020
Vifa1g01554 734 FunFam ABC transporter B family member 25 476 730 - -
Vifa1g01554 734 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524|GO:0016887
Vifa1g01554 734 SMART AAA_5 509 695 IPR003593 GO:0016887
Vifa1g01554 734 MobiDBLite consensus disorder prediction 102 122 - -
Vifa1g01554 734 Pfam ABC transporter transmembrane region 153 437 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01554 Vifa-Chr1 255870630 255886120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01554 320 720 Calmodulin-binding Proteins AT2G36910 35.194 6.85e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01554 K05662 - gmx:100779975 1158.28