Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01543 ATGGACGACTTTGCTTCAACCCGAATGAATGAGTATGCTTCATCTTCTTCTCTGGTTTTGGATAGAGAAAGAGGGGAGCTTGTGGAAGCATCCGTGAAACTGGAAGGCAAAGGTGTTTCACCTGAGAGAACTGTTGAAGCTTTGAGGAATCATAGTGAAGCTGAGAGGAGAAGAAGAGCAAGAATTAATTCACATCTTGATACACTTCGTAATGTTATTCCAGGTGCTAATAAGTTGGACAAAGCATCTTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTAAAAACAAATGCAGCACAAGCGAGTGAAGGACTAATGATACCTAAGGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCACTATGTTGTGAATACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGAACTTCATCTGATGATAATAAGGGCAGAGATTGCTACTTTAGGAGGTAGAATGAAGAATGTCTTTGTCATAATTAGTTGCAAAGAACAGAATTTCGAAGATGCCGAGTATCGACAGCTTCTCGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGATATTTTAGAAACTAGAAAGAGGAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 708 0.3757 MDDFASTRMNEYASSSSLVLDRERGELVEASVKLEGKGVSPERTVEALRNHSEAERRRRARINSHLDTLRNVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDELHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQLLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01543 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 98 IPR036638 GO:0046983
Vifa1g01543 235 Gene3D - 42 104 IPR036638 GO:0046983
Vifa1g01543 235 SUPERFAMILY ACT-like 134 211 IPR045865 -
Vifa1g01543 235 Pfam Helix-loop-helix DNA-binding domain 50 95 IPR011598 GO:0046983
Vifa1g01543 235 PANTHER TRANSCRIPTION FACTOR BHLH30 12 227 IPR045847 GO:0003700|GO:0006355
Vifa1g01543 235 SMART finulus 52 101 IPR011598 GO:0046983
Vifa1g01543 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01543 Vifa-Chr1 252754013 252755227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01543 33 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.609 4.44e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01543 HLH 8.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01543 - - lja:Lj3g3v2848980.1 377.481