Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01542 ATGGATGAAAATTGGCTCAACAATTTATTTGGTTTTTGGGAAGTAAATGGTATGGAAGATCATGCTGATTTGCCAACACATTTAAGGGATGGTTTTATTCCAATCAACAATGTTTCAGCAGATGAGAACAAAACTCTTCCTCCTAACAATAAGCCTTCCAAAAAAATTCAACATTGGAATGAAGAAGAGCACAGGTTATTTTTAGAAGGGCTTGAAAGGTTCGGCAAGGGAAATTGGAAAAAGATTTCAAAGCATGTTGTTTCAAAATCATCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATCAAAAATCAACAAAATAATAATTTATCAAACAATAAGATGGAAAGAAGAAGCAAAGTTGACAACAGTCCTTTATTCTATGGAAAATTTTACCCTGTCGAGGCCTTTAACTTCATCCAAACACAACCATTTATAGACGAATTCCTAAAACAACCAATTCCACAACTCCAAGAATAG 483 0.3395 MDENWLNNLFGFWEVNGMEDHADLPTHLRDGFIPINNVSADENKTLPPNNKPSKKIQHWNEEEHRLFLEGLERFGKGNWKKISKHVVSKSSTQVASHAQKYFIKNQQNNNLSNNKMERRSKVDNSPLFYGKFYPVEAFNFIQTQPFIDEFLKQPIPQLQE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01542 160 CDD SANT 59 102 IPR001005 -
Vifa1g01542 160 ProSiteProfiles SANT domain profile. 59 106 IPR017884 -
Vifa1g01542 160 PANTHER TRANSCRIPTION FACTOR KUA1 49 121 - -
Vifa1g01542 160 Pfam Myb-like DNA-binding domain 58 102 IPR001005 -
Vifa1g01542 160 Gene3D - 58 107 - -
Vifa1g01542 160 SUPERFAMILY Homeodomain-like 52 106 IPR009057 -
Vifa1g01542 160 ProSiteProfiles Myb-like domain profile. 51 102 IPR001005 -
Vifa1g01542 160 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 104 IPR006447 GO:0003677
Vifa1g01542 160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 106 IPR017930 -
Vifa1g01542 160 SMART sant 55 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01542 Vifa-Chr1 252745391 252754608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01542 59 105 EF-hand Containing Proteins AT3G07740 36.170 2.25e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g01542 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01542 - - tpra:123922541 127.872