Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01541 ATGGAGATGCCATCATATTTATATTTATATTCCATTCAAGAAGATGAAGTTAATTTGCCACCACACATTCCACCATTCAACAATGTTTCAGCTAATCAGAACAAAATCCTTTCTCCTAAAAAAAAACCTACCAAGAAAATTAAACATTGGAATGCAAAAGAGCACAAGTTATTTTTAGAAGGGCTTGAAAGGTTCGGCAAGGGAAATTGGAAAAAGATTTCAAAGCATGTTGTTTCAAAATCATCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATCAGAAATCAACAAAATAATAATTTATCAAACAATAAGATGGAAAGAAGAAGCAAAGTTGACAACAGTCCTTTATTCTATGGAAAATTTTACCCTGTTGAGGCATTTAACTTCATCCAAACACAACCATTTATAGACGAATTCCTAAAACAACCAATTCCACAAGTCCAAGAATAG 456 0.3246 MEMPSYLYLYSIQEDEVNLPPHIPPFNNVSANQNKILSPKKKPTKKIKHWNAKEHKLFLEGLERFGKGNWKKISKHVVSKSSTQVASHAQKYFIRNQQNNNLSNNKMERRSKVDNSPLFYGKFYPVEAFNFIQTQPFIDEFLKQPIPQVQE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01541 151 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 97 IPR017930 -
Vifa1g01541 151 Pfam Myb-like DNA-binding domain 49 93 IPR001005 -
Vifa1g01541 151 SUPERFAMILY Homeodomain-like 43 97 IPR009057 -
Vifa1g01541 151 Gene3D - 47 98 - -
Vifa1g01541 151 ProSiteProfiles SANT domain profile. 50 97 IPR017884 -
Vifa1g01541 151 ProSiteProfiles Myb-like domain profile. 42 93 IPR001005 -
Vifa1g01541 151 SMART sant 46 95 IPR001005 -
Vifa1g01541 151 CDD SANT 50 93 IPR001005 -
Vifa1g01541 151 PANTHER TRANSCRIPTION FACTOR KUA1 12 112 - -
Vifa1g01541 151 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01541 Vifa-Chr1 252729292 252729864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01541 50 96 EF-hand Containing Proteins AT3G07740 38.298 1.51e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g01541 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01541 - - tpra:123922541 109.383