Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01539 ATGGCAAAGGGATCCTGTAGTAACAACTATGAAGAAGCTAGAAAACTAAGACTTGAAGAGAACAAGAAGAGGTTTCAGGATTTAGGAATTTCAACAATATCTAAAAAATTGACCGAAATTGTAAGTGCAAGTCCAGCAAAGAAGTCCCAGAATCGTCTTTACAGACCAAAATCAAAGACTATTGTTGTAGTGGAACCTAGGCGTTCTTCTCGTGCAAGAAACCAAGTTCCTTCGTATCGTGAAGAGTTTGGTACAGACCTTCCAAATCTCCGGAAGAGTTCGAGGTCGATTCCGTCATCATGGGGAAGTTACATTGCAAGGCCACTAGAAGAAATCAAAGAAGCTACAAGTCAAGAAAGAAATCACGCTTTGGAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCGAAACCATCTTTTATCAAGTCTATGGTTCGGTCCCATGTTTATAGCTGTTTTTGGCTGGGTCTTCCAAGTAGATTTTGTGAGGAACATCTTCCAAAAACAGTGTATAACATGGTTTTAGAGGATGAAGAAGGATCAGAATATGAGGCTGTTTACATTGGGAGTAGAACTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGCGATGCACTTGTTTTTGAATTGGTTGAAGCTGCAAGATTTAAGGTTTATATTGTTAGAGCATTTCCAGATGCATATGAAGAAGAGAAAGAAGAAGAAAACAACACTTTGGTGGAAGAAGAAAATATGCACTTGTCCAAAGCAACAAAAGAATCTAAGGCTGCCAATAATCGCGAATCAGAACCGAAGACTAAAAAGCAAAAACGTGCCACTGTATGTGAAACTAAGGAATCAAAGAGTTCTGAAGAAAGCCTGTTCGAAAGTAGCATTGAAAAAGATGCTAAACCACAGAGGACAAATGTGAGTAGAAAAACTAAATCATCTCAGAAAAAAATGCCAAAAAAGTCTGAACTACCTACCACTCCTGATTCTGAAGCAAAAATTGAAACACCGAAACCAAAGGCAACTATAAGGAACACTAGATCTTCTCAGAAAACAATGCAAAAGATATCTGAAGTTTCTACTACTCTTGAGCTGAAAGAGGAAGCACAAGTTAAAACTACGAAGAAAGAACTTGTTCAGGAAGATGATATTAAGTTAAAGAAAGTTAAGTCAGTTGGAAGACCTCGAAAAAACCCAGCTCCTAAAAATCCAGTCTCTAAGTGA 1236 0.3867 MAKGSCSNNYEEARKLRLEENKKRFQDLGISTISKKLTEIVSASPAKKSQNRLYRPKSKTIVVVEPRRSSRARNQVPSYREEFGTDLPNLRKSSRSIPSSWGSYIARPLEEIKEATSQERNHALEAAEALQINLNSSKPSFIKSMVRSHVYSCFWLGLPSRFCEEHLPKTVYNMVLEDEEGSEYEAVYIGSRTGLSGGWRAFALEHKLDDGDALVFELVEAARFKVYIVRAFPDAYEEEKEEENNTLVEEENMHLSKATKESKAANNRESEPKTKKQKRATVCETKESKSSEESLFESSIEKDAKPQRTNVSRKTKSSQKKMPKKSELPTTPDSEAKIETPKPKATIRNTRSSQKTMQKISEVSTTLELKEEAQVKTTKKELVQEDDIKLKKVKSVGRPRKNPAPKNPVSK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01539 411 SUPERFAMILY DNA-binding pseudobarrel domain 136 230 IPR015300 -
Vifa1g01539 411 Pfam B3 DNA binding domain 141 230 IPR003340 GO:0003677
Vifa1g01539 411 SMART B3_2 141 232 IPR003340 GO:0003677
Vifa1g01539 411 MobiDBLite consensus disorder prediction 239 411 - -
Vifa1g01539 411 CDD B3_DNA 139 230 IPR003340 GO:0003677
Vifa1g01539 411 ProSiteProfiles B3 DNA-binding domain profile. 141 232 IPR003340 GO:0003677
Vifa1g01539 411 MobiDBLite consensus disorder prediction 345 371 - -
Vifa1g01539 411 MobiDBLite consensus disorder prediction 247 310 - -
Vifa1g01539 411 Gene3D - 115 232 IPR015300 -
Vifa1g01539 411 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 54 231 IPR044837 -
Vifa1g01539 411 MobiDBLite consensus disorder prediction 321 344 - -
Vifa1g01539 411 MobiDBLite consensus disorder prediction 372 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01539 Vifa-Chr1 252382565 252385106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01539 10 231 B3 DNA Binding Superfamily AT5G58280 51.587 2.48e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g01539 B3 6.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01539 - - cam:101498339 492.271