LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01538	ATGAATTTTTCAAAGAGTTATGGATGTGAAATTGTTCTATGCTTTCTGTTTTGCTACTGTTTTCTATTAGCTGCTACTCAAAAAACTGACCCTATTGAAGTTGATACATTGAGAATCATAAAGCAAAATTTGATTGATATTTATGGAAATTTGAGCAACTGGAATGATGGAGATCCGTGTACATCCAAGTGGAGAGGAGTTATGTGCTCCAATACAACATTAGATGATAATTTTCTACATGTTCAACGATTGCATCTAATGAATATGAGTTTGGCTGGAACATTGGTACCTGAAATAGGCAACTTATCTCATCTGAAAATATTGGACATTATGTGGAACAACATAACCGGGAACATTCCAAAGGAAATTGGCAATATCAAAACTTTAAGACTCTTGCTCTTGAATGGAAATCAATTAACAGGTCATTTACCAGAAGAGCTTGGATATCTTCCAGTCCTAAACAGAATGCAGATTGATCAAAACAATCTTACAGGACCAATACCTTTATCTTTCGCAAACTTGACAAATGCGCAACACTTTCACATGAACAACAATTCACTTAGTGGACCAATTCCACCAGAACTTTCTGGCTTAAGAAACCTTCTTCACCTTCTTCTTGACACCAACAATTTATCAGGAAATCTCCCAGATGAGCTTGCTGAGATGCCAAGCCTAAAGATACTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCAAGTTCTTATGGAAACATGCCAAAATTATTGAAATTGAGCCTTAGGAACTGCAATTTGACAGGGCCAATTCCTGATTTAAGCAAGATACCACAGCTTGGTTATCTTGACCTCAGTTTCAACCAATTGAATGAATCAATTCCTACTAATAAGCTATCTGAAAATATCACAACCATTGATTTATCAAATAATAAGCTTGATGGTACTATTCCATCTTACTTTTCTAGTCTTCCACATCTTCAGAAATTATCAATTGAAAACAACGCACTAAGTGGCAATGTTTCTTCTTCCATTTGGCAGAACAATACTTCAAATGGATCAGAAAAGCTTCTCTTAAACATGCAGAATAATCAACTCACAGGCATATCAGGCAGTACAACAAATCTTCCTCCAAACGTCACACTCTTGCTTGAGGGGAATCCTATATGCTTGAATAACAACAACACCAACACCATAGTTAAATCCTGTGGATCCGAAACTGAAAATGATATGAATGGTAACTCAAATATTACCTGTCCAAGTCAACCTTGCCCTCCTCCTTACGAATATTCTCCGGAGTGTGTCTGTGCAGTGCCGTTGCTCGTGTATTATCGATTGAAAAGTCCAGGATTTTCAGATTTTAATACATATGTGGAAGAATTTGAAAGCTTCTTGTCAAGTGGCCTTAACATAGATAAGAATCAGCTATTCATTAATAGTTTTACGTGGGAAGAAGGTCGATTGAGAATGCATTTGAAGCTTTTTCCCGTGTTTGTTGATAACGCAAACTCTTATACTTTCAATGAAAGTGAGGTTATTAGGATAAGAGACTTGTTTAGAGAATGGAATATTCATGAGAATGACTTGTTTGGGCCTTATGAACTTCTCGAATTCATTCTTCTTGATCCTTACAAAGACGGGCTTGTGGACTCTTCAAGTTCGGGAATAAGCACGGGTGCGGTGGTTGGAATTGTGTTAGGAGCAATTGCCTGTTCAGTTGCATTATCTGCGATCGTTGCCATTTATATATTAAGAATACGGTTGAAAGATTACCGTACACTTTCCAAAGGGCGTAAAGGTTCTAAGATCTCAATAAAAATCGATGGTGTAAGATCATTCAATTATGAAGAAATGGCTTCGGCTACAAGAAATTTTAGTGAGTCTGCTCAAATTGGACAAGGAGGGTATGGGAAGGTTTATAAAGGTAATCTTCATGATGGAACTGTTGTTGCCATAAAACGCGCACAGGAAGGTTCGCTGCAAGGTGAGAGGGAGTTTCTTACAGAGATACAATTGCTATCGAGGTTACATCATCGCAACCTTGTGTCTCTGGTTGGATATTGTGATGAAGATGGGGAACAGATGCTGGTTTATGAATATATGCCAAATGGAACACTAAGGGATCACCTTGCTGCTTATTCTAAAGAACCTCTTAGTTTTGTAATGAGATTAAAGATTGCTCTAGGGTCAGCTAAAGGTCTTGTGTACCTACACACCGAGGCTGATCCTCCAATATTCCACAGAGATGTCAAAGCTAGTAACATATTATTAGACTCAAAGTACATAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTAGCACCAGTTCCAGATGTTGAAGGCAATTTGCCTGCTCATGTATCTACCGTTGTAAAAGGGACCCCGGGTTACCTTGATCCAGAGTATTTCTTAACGCGCAAGTTAACTGACAAAAGTGATGTTTATAGTCTCGGTGTTGTATTTCTTGAAATTGTGACCGGAAAGCCACCAATCTTCCATGGTGAAAATATTATTAGACAGGTTAAATTGGCATTTGAATCGGGTGGAATATTTTCGATTGTTGATAACAGAATGGGATTTTACACTAGTGAATGTGTGGAAAAGTTATTGATTTTGGGTTTAAAGTGTTGCAAAGACGCGCCGGACGAAAGGCCTAAAATGGAAGAAGTGGCTAGAGAACTCGAAAACATATTGTCTATGATGCCTGAATATCATGCCAAAAAGGGAGGTGAATATGATACAAGTGGTTCTGGAAGTACATTCAGTTCACAACATTCATCATCTGTTATGAAGAATCCTTTTGTATCAGGAGATAGTTTGGGGAGTGTGCTTGTTAGTGGAGATATACCTACCATTAGACCAAGATAG	2847	0.3786	MNFSKSYGCEIVLCFLFCYCFLLAATQKTDPIEVDTLRIIKQNLIDIYGNLSNWNDGDPCTSKWRGVMCSNTTLDDNFLHVQRLHLMNMSLAGTLVPEIGNLSHLKILDIMWNNITGNIPKEIGNIKTLRLLLLNGNQLTGHLPEELGYLPVLNRMQIDQNNLTGPIPLSFANLTNAQHFHMNNNSLSGPIPPELSGLRNLLHLLLDTNNLSGNLPDELAEMPSLKILQLDNNNFGGNSIPSSYGNMPKLLKLSLRNCNLTGPIPDLSKIPQLGYLDLSFNQLNESIPTNKLSENITTIDLSNNKLDGTIPSYFSSLPHLQKLSIENNALSGNVSSSIWQNNTSNGSEKLLLNMQNNQLTGISGSTTNLPPNVTLLLEGNPICLNNNNTNTIVKSCGSETENDMNGNSNITCPSQPCPPPYEYSPECVCAVPLLVYYRLKSPGFSDFNTYVEEFESFLSSGLNIDKNQLFINSFTWEEGRLRMHLKLFPVFVDNANSYTFNESEVIRIRDLFREWNIHENDLFGPYELLEFILLDPYKDGLVDSSSSGISTGAVVGIVLGAIACSVALSAIVAIYILRIRLKDYRTLSKGRKGSKISIKIDGVRSFNYEEMASATRNFSESAQIGQGGYGKVYKGNLHDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLVGYCDEDGEQMLVYEYMPNGTLRDHLAAYSKEPLSFVMRLKIALGSAKGLVYLHTEADPPIFHRDVKASNILLDSKYIAKVADFGLSRLAPVPDVEGNLPAHVSTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEIVTGKPPIFHGENIIRQVKLAFESGGIFSIVDNRMGFYTSECVEKLLILGLKCCKDAPDERPKMEEVARELENILSMMPEYHAKKGGEYDTSGSGSTFSSQHSSSVMKNPFVSGDSLGSVLVSGDIPTIRPR	948

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01538	948	SUPERFAMILY	Protein kinase-like (PK-like)	603	898	IPR011009	-
	Vifa1g01538	948	ProSiteProfiles	Protein kinase domain profile.	618	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g01538	948	ProSitePatterns	Protein kinases ATP-binding region signature.	624	646	IPR017441	GO:0005524
	Vifa1g01538	948	FunFam	Predicted protein	171	393	-	-
	Vifa1g01538	948	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	694	903	-	-
	Vifa1g01538	948	FunFam	Leucine-rich repeat receptor-like kinase	32	147	-	-
	Vifa1g01538	948	Gene3D	Phosphorylase Kinase; domain 1	589	693	-	-
	Vifa1g01538	948	Gene3D	Ribonuclease Inhibitor	32	184	IPR032675	-
	Vifa1g01538	948	Pfam	Leucine rich repeat N-terminal domain	33	70	IPR013210	-
	Vifa1g01538	948	Pfam	Protein tyrosine and serine/threonine kinase	621	887	IPR001245	GO:0004672\|GO:0006468
	Vifa1g01538	948	SMART	serkin_6	618	894	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g01538	948	FunFam	Leucine-rich repeat protein kinase family protein	582	693	-	-
	Vifa1g01538	948	Gene3D	Ribonuclease Inhibitor	185	292	IPR032675	-
	Vifa1g01538	948	PANTHER	RECEPTOR-LIKE PROTEIN 55	44	891	-	-
	Vifa1g01538	948	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	738	750	IPR008271	GO:0004672\|GO:0006468
	Vifa1g01538	948	CDD	STKc_IRAK	624	890	-	-
	Vifa1g01538	948	Gene3D	Ribonuclease Inhibitor	293	397	IPR032675	-
	Vifa1g01538	948	SUPERFAMILY	L domain-like	44	411	-	-
	Vifa1g01538	948	Gene3D	Transferase(Phosphotransferase) domain 1	694	907	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01538	Vifa-Chr1	252348972	252354450	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01538	11	900	Receptor kinase-like Gene Family	AT5G01950	55.938	0.0	946

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vifa1g01538		PK_Tyr_Ser-Thr	1.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01538	-		-	gmx:100801035	1298.88