Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01534 ATGGCAGAGTTTACATTGAATTCAATGAAGTTCTACTCATCTCCATTGCAAGCTTTCCTTTTTATCATTGTAATTCTTTCTCCTCTAGTTATTGCTGACCTGAATTCTGATAAGCAAGCCCTTCTTAATTTTGTTACTTCTGTCCCTCATCGACGGAACCTTAAATGGGACCTATCTACCTCAATATGTACATCTTGGATAGGCATCACATGCAATCCAAACCTTACTCGTGTTGTTTCTGTTCGGCTCCCTGGAGTCGGACTAGTAGGCACCATTCCAGCCGATACACTCGGCAAAATTGACTCACTCAAAACTATCAGCCTTCGCTCGAACTTACTTAGTGGAAATCTACCTCAGGATATTACTTCTCTTCCGTCTCTACAATATCTCTACCTTCAACACAATAACTTTTCTGGTAAGTTACCAACCTCGTTGTCACCGCAACTCAATGCACTTGTTTTGTCATACAATTCATTCACTGGTAGCATTCCAAAGACACTGCAAAACTTAACACAACTAACTCATTTGAGCCTCGAGAACAATTCGTTATCTGGACCGATACCTGATCTCCATGTCAATCTCAAGCAGTTGAATTTAAGTTATAACCATTTGAATGGCTCTATCCCTTCGTCTCTACATAGTTTCTCAAGTTCATCCTTTGAAGGGAACTCTCTTTTATGTGGATTACCTCTAAAGTCGTGCTCATCAGTCCCTCGTTCATCCGCGCCTCCTGCATCTGCTCCTGTAAGACATAACTCCAAAAGTAAACTTAGTAAAGGAGCTATCATTGCAATTTCTGTTGGTGGAGCTGCTCTGTTGTTTTTTGTAGTTCTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAACGGAAGCTCGAGAGTTGTTAAAGATAAGGGGCCTAGTGGCGGTGGTGGAAGGACTGAAAAACCGAAAGAAGAGTTTGGAAGTGGCGTGCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGGTGCTCTTATAATTTCGATCTCGAGGATTTGCTAAGGGCTTCGGCTGAGGTTCTCGGAAAGGGAAGTTATGGAACCGCATATAAGGCTATCTTGGAGGAAGCAACAACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAGGGAGTTTGAACAGCAGATGGAGATTGTTGGAAGCATTGGAAATCACCCGAATCTCGTTCCACTTCGTGCTTATTATTATTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTTCCCAAATGGCAATCTATCTGTACTCTTGCATGGTAGTAGGACAGGCGGAAGAGCTACCTTAGATTGGAACATGCGAGTAAAAATCACACTCGGAATTGCTCGGGGAATTGCGCATTTACATTCAGTTGGCGGTCCAAAATTCACACACGGAAATGTGAAATCCTCCAATGTCCTCATAAGCCAAGATAACGATGGCTGCATTTCAGATTTCGGCCTGACACCAATCATGAACGTTCCTGCAACCCCTTCCAGAACCGCAGGCTACCGTGCTCCCGAGGTAATGGAAACTCGAAAGCACACTCATAAATCAGACGTGTACAGTTTCGGTGTCCTCCTTTTGGAAATGCTTACTGGTAAAGCGCCACAACAGTCTCCGGTACGCGATGACATGGTTGATCTGCCTAGGTGGGTTCAGTCTGTTGTTCGGGAGGAATGGACCGCTGAGGTTTTCGATGTGGAGCTAATGAGGTACCAAAATATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGCATGGCTTGTGTTGCCAAGGTTCCGGATATGAGGCCTAACATGGAGGAAGTAGTGAGAATGATTGAAGAAATTCGACAATCTGACTCGGATAACCGACCTTCTTCAGACGAGAATAAATCCAAGGATTTAAATGTTCAAACACCATGA 1920 0.4281 MAEFTLNSMKFYSSPLQAFLFIIVILSPLVIADLNSDKQALLNFVTSVPHRRNLKWDLSTSICTSWIGITCNPNLTRVVSVRLPGVGLVGTIPADTLGKIDSLKTISLRSNLLSGNLPQDITSLPSLQYLYLQHNNFSGKLPTSLSPQLNALVLSYNSFTGSIPKTLQNLTQLTHLSLENNSLSGPIPDLHVNLKQLNLSYNHLNGSIPSSLHSFSSSSFEGNSLLCGLPLKSCSSVPRSSAPPASAPVRHNSKSKLSKGAIIAISVGGAALLFFVVLVIVLCCLKKKDNGSSRVVKDKGPSGGGGRTEKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEATTVVVKRLKEVVVGKREFEQQMEIVGSIGNHPNLVPLRAYYYSKDEKLLVCDYFPNGNLSVLLHGSRTGGRATLDWNMRVKITLGIARGIAHLHSVGGPKFTHGNVKSSNVLISQDNDGCISDFGLTPIMNVPATPSRTAGYRAPEVMETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDMRPNMEEVVRMIEEIRQSDSDNRPSSDENKSKDLNVQTP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01534 639 Pfam Leucine rich repeat 91 137 IPR001611 GO:0005515
Vifa1g01534 639 Gene3D Ribonuclease Inhibitor 194 235 IPR032675 -
Vifa1g01534 639 MobiDBLite consensus disorder prediction 303 319 - -
Vifa1g01534 639 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Vifa1g01534 639 Gene3D Ribonuclease Inhibitor 147 191 IPR032675 -
Vifa1g01534 639 FunFam pollen receptor-like kinase 1 312 419 - -
Vifa1g01534 639 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515
Vifa1g01534 639 ProSiteProfiles Protein kinase domain profile. 344 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01534 639 Gene3D Transferase(Phosphotransferase) domain 1 420 638 - -
Vifa1g01534 639 FunFam Leucine-rich repeat receptor-like protein kinase 147 234 - -
Vifa1g01534 639 MobiDBLite consensus disorder prediction 291 319 - -
Vifa1g01534 639 ProSiteProfiles Leucine-rich repeat profile. 193 215 IPR001611 GO:0005515
Vifa1g01534 639 SUPERFAMILY Protein kinase-like (PK-like) 348 622 IPR011009 -
Vifa1g01534 639 FunFam Leucine-rich repeat receptor-like protein kinase 36 146 - -
Vifa1g01534 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 626 - -
Vifa1g01534 639 SUPERFAMILY L domain-like 39 233 - -
Vifa1g01534 639 MobiDBLite consensus disorder prediction 614 639 - -
Vifa1g01534 639 Pfam Protein kinase domain 347 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01534 639 PANTHER OS05G0588300 PROTEIN 20 627 - -
Vifa1g01534 639 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Vifa1g01534 639 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Vifa1g01534 639 MobiDBLite consensus disorder prediction 614 630 - -
Vifa1g01534 639 CDD STKc_IRAK 350 615 - -
Vifa1g01534 639 ProSitePatterns Protein kinases ATP-binding region signature. 350 381 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01534 Vifa-Chr1 251156965 251158990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01534 4 637 Receptor kinase-like Gene Family AT5G58300 67.802 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g01534 Pkinase 4.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01534 - - gmx:100818344 956.436