Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01525 ATGTCTCTACACAAGCGGAAGCCTGAAACACCAAGTTCCATTTTTGAGGATGACCCATCAATCAAAACAACGAGGAAACCCAAAAGAAAACTTCTCCGAATCATAATCACAGACCACGACGCCACCGATTCCGATTCCTCAGGCGATGAAGTGACAGAGAAAAACAACCAAAGAACAACACGAAGAAAACCAAAAAGAGAAGTCCTTGAAATCAACATGCACCATCCCGTATTGGATTCTTCTTTCTCGTTCTCTTCTCCTTCATCATCTTCATCTTCTCTTGCATGCTCAGAGAAAAACCACAAAAAATACAATAGAGTTAAGAAAGCACCAACCTTGTCTGCCACGCGCCACCGCAACAAATTCCGTGGAGTAAGACAACGGCCATGGGGAAAGTGGGCCGCTGAGATCCGAGACCCAGCCCAACGGAAACGTCTCTGGCTTGGAACGTTTAACTCCGCCGAAGAAGCCGCCGCCGAGTACGACAGAGTTGCTGTGATGCTGAGAGGTCCTGACGCCGTCACCAACTTTCCTATTTTACCGGCGAAGGTGGAATTGGAAACTGAAGTACCATCGCCGGTGAATGGCAGAGATGACGGCGGAGCTGGTTACTCCGACGCTTTGGCTTCGCCAACGTCTGTTTTAACCTACGACTGTGATTCGACGCCGTTTGACTGTTATCGTTACGGAGACGTGGACGCTTTTGGGTTCCACATTGACGCGCCGTTAAGTTTGCCGGAAGTTAACGGTTCGCTGACGTGTCATCCGAAGTTGGAAAAAGAAGAGTCGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCATAG 831 0.485 MSLHKRKPETPSSIFEDDPSIKTTRKPKRKLLRIIITDHDATDSDSSGDEVTEKNNQRTTRRKPKREVLEINMHHPVLDSSFSFSSPSSSSSSLACSEKNHKKYNRVKKAPTLSATRHRNKFRGVRQRPWGKWAAEIRDPAQRKRLWLGTFNSAEEAAAEYDRVAVMLRGPDAVTNFPILPAKVELETEVPSPVNGRDDGGAGYSDALASPTSVLTYDCDSTPFDCYRYGDVDAFGFHIDAPLSLPEVNGSLTCHPKLEKEESFEEFDLDEFMTWP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01525 276 MobiDBLite consensus disorder prediction 80 98 - -
Vifa1g01525 276 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Vifa1g01525 276 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 215 - -
Vifa1g01525 276 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700|GO:0006355
Vifa1g01525 276 MobiDBLite consensus disorder prediction 1 68 - -
Vifa1g01525 276 PIRSF PTI6 1 276 IPR017392 GO:0003700
Vifa1g01525 276 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 MobiDBLite consensus disorder prediction 9 68 - -
Vifa1g01525 276 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Vifa1g01525 276 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Vifa1g01525 276 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01525 Vifa-Chr1 250427666 250428496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01525 22 219 AP2-EREBP Transcription Factor Family AT4G27950 42.927 2.02e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g01525 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01525 K13434 - gmx:100800489 300.441