Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01512 ATGAAAACCCCCACCGGAACTCGATCTTCTCCGGCCACCGGAGCCGAAGGCGGCTGGTCCGATGAGGCCACGTTTACACTCATCGACGTCTGGGGAAAACTTTATAATAAAGTTAACCGGAAAATCTTCCGTCAGTCTCACTGGAAGGAGGTTGCAAAAGCCGTCAACAGCTACCACGGCTACGACAGAAAATTGCGCCGCACTTACGCTCAGTGCAAAAGCCGAATCAACGCGCTCAAGAAGAAGTATACGATCGAGAAGGCTAGGGTTTCTGATTCCAGCGAGTACGATAATGTATGGCCGTTTTTCGAGAAACTTGATTCGGTCATTGGAGATAATTTACCGCCGAAGAATCTCTCTCCGCCGTTTGATCCTCCTGTTAAGGTTCCGGCATGGGTGCTCGCACCGGTCGGTCGTCGATCCAGCACTCAGAAACAACCTGTGCCGGTGACAACTTCTTCTTTGGAGAGGTTGGATGAATCAAGTTTTTGCCGGAATTTAGCTGTCTTTGCTGCAGCGGCTGCTGCAGCCGCCGAAGCAGAGATTGAAGATTCCAACTCTGATGATTCAGCTTCGGATGAGTTGGAGTTGAGTAACGAGAGCAAGAAGAGGAAGAGAGGAAGAATTGATGTGGAATTTGGGCTTAGAGAGGTTGCAAGTGCTGCAGAGAAGTTTAGTGAGATACACGAGAGAGTGGACGCATCGAAGCAGAGAAAAAATGTGGCTTTGGAGAAACAGAAGATGCATTTTTCTAAGGATTCTCAGAGGATGCAGCTTCGTAAATCCAACTACTCAAAGTGA 801 0.4869 MKTPTGTRSSPATGAEGGWSDEATFTLIDVWGKLYNKVNRKIFRQSHWKEVAKAVNSYHGYDRKLRRTYAQCKSRINALKKKYTIEKARVSDSSEYDNVWPFFEKLDSVIGDNLPPKNLSPPFDPPVKVPAWVLAPVGRRSSTQKQPVPVTTSSLERLDESSFCRNLAVFAAAAAAAAEAEIEDSNSDDSASDELELSNESKKRKRGRIDVEFGLREVASAAEKFSEIHERVDASKQRKNVALEKQKMHFSKDSQRMQLRKSNYSK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01512 266 Gene3D - 19 84 - -
Vifa1g01512 266 MobiDBLite consensus disorder prediction 233 256 - -
Vifa1g01512 266 MobiDBLite consensus disorder prediction 182 208 - -
Vifa1g01512 266 MobiDBLite consensus disorder prediction 233 266 - -
Vifa1g01512 266 Coils Coil 254 266 - -
Vifa1g01512 266 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 8 259 IPR044823 -
Vifa1g01512 266 Pfam Myb/SANT-like DNA-binding domain 19 108 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01512 Vifa-Chr1 247850356 247851156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01512 8 159 Trihelix Transcription Factor Family AT3G14180 37.821 1.29e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g01512 Myb_DNA-bind_4 7.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01512 - - tpra:123893969 280.026