Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01511 ATGGATCTCCTCTTCGAAAAGACCCTTTTAGCCCTCTTCATCGCCGCCATAACCGCCATCACAATCTCCAAACTCCGCGGCAAACGCTTCAAACTCCCTCCCGGCCCCTTCCCCGTCCCCATCTTCGGCAACTGGCTCCAAGTCGGCGATGACCTCAACCACCGCAACCTCACCGACCTAGCCAAACGCTTCGGCGAAATTCTCCTCCTCCGCATGGGACAACGCAACCTCGTCGTCATCTCCTCCCCAGAACTCGCCAAAGAAGTCCTCCATACCCAAGGAGTCGAATTCGGCTCCAGAACACGAAACGTCGTTTTCGACATCTTCACCGGAAAAGGACAGGACATGGTTTACACTGTCTACGGTGAGCACTGGCGCAAAATGAGAAGAATCATGACAGTTCCGTTCTTTACCAACAAAGTTGTCCAACAGTACAGATTCGGTTGGGAATCTGAAGCGGCGAGTGTTGTCGAGGATGTGAAGAAAAATCCAGAAGCTAGTGTCAATGGAATTGTGATACGAAGAAGATTGCAATTGATGATGTATAATATTATGTATAGAATTATGTTTGATAGGAGATTCGAAAGCGAGGAGGATCCTTTGTTTGTGAAGTTGAAAGCTTTGAATGGCGAAAGGAGTCGTTTGGGGCAGAGTTTCGAGTATAACTATGGTGATTTTATTCCGATTTTGAGACCGTTTTTGAAGGGCTATTTAAAGGTTTGTAAAGACCTTACGGATACAAGGTTGCAGCTTTTCAAAGACTATTTTGTTGACGAGAGAAAGAAGCTTGGAAGTACTAAGAGCACGGATAATGAAGGGATTAAATGTGCTATTGATTATATTTTGGATGCTCAAAAGAAGGGTGAGATCAATGATGACAATGTTCTTTACATTGTTGAGAACATCAATGTTGCTGCAATTGAAACAACATTATGGTCAATTGAATGGGGAATTGCTGAGCTAGTGAATCACCAAGAGATTCAAAACAAGTTAAGAGAAGAGATGGACAAAGTTCTTGGACCAGGACACCAAGTAACCGAACCTGATCTCGAGAAGCTACCTTACCTACAAGCCGTGATCAAGGAAACGCTCCGTTTTCGAACGGTGGTTCCATTTCTCGTCCCACATATGAACCTTCATGATGCGAAGCTCGGTGGTTTTGACATCCCGGCCAAGAGCAAGATTTTGGTCAATGTGTGGTGGCTAGCTAACAACCCGGCTCTATGGAAAAAGCCGGAGGAGTTTAGGCCCGAGAGGTTCTTGGAGGAAGAGGCTCATGTTGAGGCGAATGGGAATGACTTTAGGTTCCTTCCTTTCGGTGTTGGTAGAAGGAGTTGCCCGGGGTTTATTCTCGCTTTACCTATCCTTGGCATTACTATCGGGCGTTTGGTTCAGAATTTCGAGCTTTTGCCTCCACCGGGACAATCTAAGATCGATACTTCTGAGAAAGGAGGACAGTTTAGTCTGCACATACTCAAGCATTCCACCATTGTTGCTAAACCAAGATCATTTTAA 1515 0.4554 MDLLFEKTLLALFIAAITAITISKLRGKRFKLPPGPFPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVYTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVEDVKKNPEASVNGIVIRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLGQSFEYNYGDFIPILRPFLKGYLKVCKDLTDTRLQLFKDYFVDERKKLGSTKSTDNEGIKCAIDYILDAQKKGEINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQEIQNKLREEMDKVLGPGHQVTEPDLEKLPYLQAVIKETLRFRTVVPFLVPHMNLHDAKLGGFDIPAKSKILVNVWWLANNPALWKKPEEFRPERFLEEEAHVEANGNDFRFLPFGVGRRSCPGFILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01511 504 CDD CYP73 62 495 - -
Vifa1g01511 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Vifa1g01511 504 FunFam Trans-cinnamate 4-monooxygenase 22 496 - -
Vifa1g01511 504 Gene3D Cytochrome P450 19 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 SUPERFAMILY Cytochrome P450 33 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 Pfam Cytochrome P450 33 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01511 504 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 4 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01511 Vifa-Chr1 247530036 247532583 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01511 3 503 Monolignol Biosynthesis Gene Families AT2G30490 81.637 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01511 K00487 - cave:132189081 905.975