Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01509 ATGAAACCGCTCCCCAGAACTCGACCGTCTCCGTCCACCGGCGCCGATGGCGGCTGGTCCGAGGAGGCCACATTCACACTCATCGACGCCTGGGGCAAACTTTACAAGACGCTTAACCCTAGAAACCTCCGTCAGTATCACTGGAAGGAGGTTGCAAAAGCCGTCAACGACAATCATGCCTTCGTCAGAAAAGCGCGCCGCACTTACGATCAGTGCAAAAGCCGCATCAACGCGCTCAAGAAGAGGTACGCTACCGAGAAAGCTAGGGTTTCTGATTCCGGCGACTACGACTACGCATGGCCCTTTTTCGAAAAAATCAATTCCGTCATTGGAGATGTTTTACCGGTGAAGAAGCCATCGCTATCGCCGCCGGTTGTCACTCCTGTTAGGGCTTCGGCATGGGCGCTTGGTCCGGTTGGTCGCCAATCTTGGACTCAGAGTCAGAGCAGTCTAAAACGACTTGCGCCGGAGATAACATCGCCTTCGGGGAGCTTGGGTGAATCGCGTTTTAATCGGAATTTAGCTGCCTTTGCTGCAGCGGCTGCTGCAGCCGCGGAAGAGGAGATTGATGATTCGAATTCCGATAACTCAGATTCAGATTATTTGGAGTTGAGCAATGAGAGTGAGAAGAGGAAGAGGGGAAGAAATGATATGGAATTTGGGCATAGAGAGGCTGCAAGTGCTACAGACAAGTTTAGTGAGATACATGAGAGAGTGGACGCATCAAAGCAGAGAAAAAATGTGGCTTTGGAGAAACAGAAGATGCATTTTTCGAAGGGTTCTCAGAGGATGCAGCTTCATAAAACCAACCACTCAAAACACATGGATGATCTCTTAGCTCATTCCAGAAGTGGTTTAGATACTCTTTCTACCAATAGAAAGCGTAAACGTGGTCCCACACAAATGAAAAAGTTAGCACTTATTGATGGACAAAGGATACCGATTGAATTTAATCAATTAACGGGTAAACCGTCAGGGGAAAACAAGACTAAGTTCAAGAGTTATGTGGGTTTTCTTAGTCGAAGCAAAATCAGTATTTTGATTAATGAATGGGATTCTGTAGATGAGGACGTGAAGGATGACATTTGGACAAGCATCTTGGAAATATGGGATGTTCCTAATTCTGGGTTCTTACGAAAAAAATTGATGTCTTATGTGGGTGAACGTTGGAGGAATTTTAAGACTATTTTGACTTCCAAATATGTACATGGAGAACATAGTGATAAATCTCCTCTTGAGGTCTATAGTTTTCTAACTGAAGAAATATGGGAGGAGTTTGTTCAAATGCGATTGGACCCTTCCTTTCAGGAGAAAAGAAAGAAAGCGCAAATCAGTTCTTTTCTAAACAAACACCCTCACAGATTGTCTCGTGGGGGGTATGAGTTGCTCGAGGAGAAGATAATGCAAGAGAAATTAAAACAAAAAGACGAATCATTGGGAGATTCAGTAGCTGCACCTCCATCTCCACCAGCACGCCATGAACAATGGAAGAAAGCTCGACAAAATGCATCAGGAGATTACCTAACAGAGGACACACGCATTATTGCTGAGAAAATTGATTCTCTTGTTGAAAAAGCATCTCAAGGAGATTTTGTTCCACAAGGACGTAAAGATATTTTGGCAGAAGCCATTGGCCGACCTGAGCACTCTGGTGGTGTTCGTGGTGTTGGTCGTGGTGTTGGTATTCGACAATACTTTGGACCACATTCACGTGAAGCCTCCACTCCACCTTTTTTTAGTAGTGAACAAATAGAGACCATAAAAGTGGAGCTTACTCAACAAATTAGAGAGCAATTGATGCAGGATTTGTCATCTATGGGTTTCTCTAAGAACTTACCAGCTTGCTCTCCTAATAACATTGTGCCTGCGAGCCCGAAGGGTAGTCATTCCATTGAGCCACCTATACCAGAGGAGGATGAAATCCCAAAAGAATGTGAACTGTATGTTGATAATTTAATTCATGCCGTGGCCTTTGGTAGTGTTTACAAGTTAGGGCCCACCATACATAATCAAATGCTAGAAAAGGATATGGTGAGGGTGGTGGTCAACGAGGTCCTAGATGCAAATGCTCAAGTGCCTATGCCCACAGATGAAGTGGAAACGGTTGGGCACGCTCTTAACAATTTTATTCAATGGCCGAAAAGACTTGTGCAAATTATTTCTGATAAGGATGCTGATGGATCTGGGGAAGAGGACGTTTCAGCCAAAAAGGTGGATCCTCAACTAGATTCAGTTCAACAATTGGTTTTAAAGGCAATGTGTATGTCAGAATCTATAAAGCTCGAATTGGAACACGAAAGGATGAAGTTTCTCTGGCTCTCACAGAGAGATATTATGGAATTGTGTATGGGCAAACAAGAGTTATCCATAACTGTTCTACGATTGTGGTTAACGTATTTGAATCGCCTTTCTCTTAATGAGGGTAAGAGTGACTTGCATGGATTTATTGATCCATGTTTTATTCAAAGTCCACATGATCCAACTAAAGCTGAAGCCTACATACAGAATAAATTATACAATGATAAAAAAGAGTGTTACCTAGCTCCTTATCACAACAACCGTCATTGGCAATTGCTCATTGTTTGCCCTAAGAAGAATCATGTAGTATTCCTATGCTCGTTGGAAAGAAAACCAGATAAAAATATTATTCACACTATAGATACAGCTTTGGATGGATATCGTAAGCTGCAAGGTGTTCAAAAGAAGAAGCCAATATGGAATGTCCCCGTCTGTCAAAGACAGCCTGATACTTATGAAAGCGGCTATTATATTATGATACATATGTTGAACATTGTATCTGGTGGTATTATTGATCCATGGAAGAAGAAGGTATTTGGAAATTCAGAACCATTCCATGAGGATGAACTTATAAACGTTCGACAACGTTTTGCTAGTTTTATTCTAGAGTATATTCTATAA 2919 0.4248 MKPLPRTRPSPSTGADGGWSEEATFTLIDAWGKLYKTLNPRNLRQYHWKEVAKAVNDNHAFVRKARRTYDQCKSRINALKKRYATEKARVSDSGDYDYAWPFFEKINSVIGDVLPVKKPSLSPPVVTPVRASAWALGPVGRQSWTQSQSSLKRLAPEITSPSGSLGESRFNRNLAAFAAAAAAAAEEEIDDSNSDNSDSDYLELSNESEKRKRGRNDMEFGHREAASATDKFSEIHERVDASKQRKNVALEKQKMHFSKGSQRMQLHKTNHSKHMDDLLAHSRSGLDTLSTNRKRKRGPTQMKKLALIDGQRIPIEFNQLTGKPSGENKTKFKSYVGFLSRSKISILINEWDSVDEDVKDDIWTSILEIWDVPNSGFLRKKLMSYVGERWRNFKTILTSKYVHGEHSDKSPLEVYSFLTEEIWEEFVQMRLDPSFQEKRKKAQISSFLNKHPHRLSRGGYELLEEKIMQEKLKQKDESLGDSVAAPPSPPARHEQWKKARQNASGDYLTEDTRIIAEKIDSLVEKASQGDFVPQGRKDILAEAIGRPEHSGGVRGVGRGVGIRQYFGPHSREASTPPFFSSEQIETIKVELTQQIREQLMQDLSSMGFSKNLPACSPNNIVPASPKGSHSIEPPIPEEDEIPKECELYVDNLIHAVAFGSVYKLGPTIHNQMLEKDMVRVVVNEVLDANAQVPMPTDEVETVGHALNNFIQWPKRLVQIISDKDADGSGEEDVSAKKVDPQLDSVQQLVLKAMCMSESIKLELEHERMKFLWLSQRDIMELCMGKQELSITVLRLWLTYLNRLSLNEGKSDLHGFIDPCFIQSPHDPTKAEAYIQNKLYNDKKECYLAPYHNNRHWQLLIVCPKKNHVVFLCSLERKPDKNIIHTIDTALDGYRKLQGVQKKKPIWNVPVCQRQPDTYESGYYIMIHMLNIVSGGIIDPWKKKVFGNSEPFHEDELINVRQRFASFILEYIL 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01509 972 MobiDBLite consensus disorder prediction 203 231 - -
Vifa1g01509 972 MobiDBLite consensus disorder prediction 187 231 - -
Vifa1g01509 972 Coils Coil 62 89 - -
Vifa1g01509 972 PANTHER OS10G0338966 PROTEIN-RELATED 308 807 - -
Vifa1g01509 972 Pfam Myb/SANT-like DNA-binding domain 19 108 IPR044822 -
Vifa1g01509 972 SUPERFAMILY Cysteine proteinases 758 970 IPR038765 -
Vifa1g01509 972 Gene3D - 19 84 - -
Vifa1g01509 972 Gene3D Adenoviral Proteinase; Chain A 754 971 - -
Vifa1g01509 972 Pfam Ulp1 protease family, C-terminal catalytic domain 839 926 IPR003653 GO:0006508|GO:0008234
Vifa1g01509 972 MobiDBLite consensus disorder prediction 474 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01509 Vifa-Chr1 247453535 247458426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01509 8 125 Trihelix Transcription Factor Family AT3G14180 41.667 2.27e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g01509 Peptidase_C48 0.00014 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01509 - - tpra:123893969 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01509 1 247453535 247458426 Vifa1g01509 1 247453535 247458426 ECH